Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01003 ATGAATTGTGTGATTGTAGTAGTAGAAGCCATGGAAACCTTGAACCGCAGATTAAAGGAACGTTTTTCTTTGCTCATGTTCATGATCATTTTTTTCATGATGTTTGGTCCCACAAGGTCGCAATTAACTGTGGATTTCTATAAGAGTTCATGTCCAAATGTTCTTAGAATCGTGAGGAAAGAAGTCATGAATGCTATCAAGAGTGAGATGCGAATGGCTGCTTCCCTTCTTCGTCTCCACTTTCACGACTGCTTTGTTAACGGTTGTGACGGATCCGTGCTGTTGGATGGAAGTGATGGGGAGAAATTTGCACTTCCCAACATCAATTCTCTTAGAGGGCTTGAAGTTGTGGATACAATCAAAGCCGCACTGGAGAATGCATGCCCCGGAGTTGTATCATGTGCTGATTTGTTAACTATAGCTGCCAGAGATTCTGTTCTCTTGAGTGGAGGACCGTCATGGAAAGTTTTATTGGGGAGAAGAGATGGATTGGTAGCGAACAGAACAGGAGCCGATCAGGGACTTCCCTCTCCATTCGAAAGCCTTGATGGTATAAACAAGAAGTTCGTTGCTGTTGGCCTTGATACCACCGACGTCGTCGCTTTATCTGGAAGTGGTTCTCCAGATCCAACCATGGAGTCCGCCATGGCAACTGATCTTCAAGCTTTATGCCCTCTGACAGACGACGGCAACAAGACCACTGTTCTTGACAGAAACTCCACCGATTTATTCGACAACCATTACTTCAAAAACTTGCTCAACCAAAAGGGTCTCTTGGGCTCCGACCAAATTCTGTTTTCAGGCAATGAAACTCAGACCACCACTACAAAAGCCTTGGTCCAAGCTTATAGCTCTAACACCACGCTTTTCTTCGCCGACTTCGTCAAAGCCATGATCAAGATGGGGAATATAAGCCCCCTCACTGGCTCCTCTGGTCAGATCCGAAACAACTGCAGGCTCCTTAATTCCTCCTAA 975 45.44 MNCVIVVVEAMETLNRRLKERFSLLMFMIIFFMMFGPTRSQLTVDFYKSSCPNVLRIVRKEVMNAIKSEMRMAASLLRLHFHDCFVNGCDGSVLLDGSDGEKFALPNINSLRGLEVVDTIKAALENACPGVVSCADLLTIAARDSVLLSGGPSWKVLLGRRDGLVANRTGADQGLPSPFESLDGINKKFVAVGLDTTDVVALSGSGSPDPTMESAMATDLQALCPLTDDGNKTTVLDRNSTDLFDNHYFKNLLNQKGLLGSDQILFSGNETQTTTTKALVQAYSSNTTLFFADFVKAMIKMGNISPLTGSSGQIRNNCRLLNSS 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14330501 14334487 - Lsi10G010030.1 Lsi10g01003 672560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01003 324 Gene3D Peroxidase, domain 2 176 205 - -
Lsi10g01003 324 SUPERFAMILY Heme-dependent peroxidases 41 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 ProSitePatterns Peroxidases active site signature. 73 84 IPR019794 GO:0004601
Lsi10g01003 324 Pfam Peroxidase 58 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 PANTHER PEROXIDASE 72-RELATED 26 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 CDD secretory_peroxidase 41 319 IPR033905 GO:0004601|GO:0042744
Lsi10g01003 324 Gene3D Peroxidase, domain 2 207 302 - -
Lsi10g01003 324 PRINTS Plant peroxidase signature 112 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 PRINTS Plant peroxidase signature 150 165 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 PRINTS Plant peroxidase signature 131 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 PRINTS Plant peroxidase signature 75 95 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 PRINTS Plant peroxidase signature 51 70 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 PANTHER PEROXIDASE 59 26 321 - -
Lsi10g01003 324 Gene3D - 303 322 - -
Lsi10g01003 324 ProSiteProfiles Plant heme peroxidase family profile. 41 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 Gene3D - 45 175 - -
Lsi10g01003 324 PRINTS Haem peroxidase superfamily signature 132 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 PRINTS Haem peroxidase superfamily signature 150 162 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01003 324 PRINTS Haem peroxidase superfamily signature 73 87 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01003 Lsi-Chr10:14330501 Lsi10g00996 Lsi-Chr10:14274218 1.74E-96 dispersed
Lsi10g01002 Lsi-Chr10:14323027 Lsi10g01003 Lsi-Chr10:14330501 1.57E-99 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01003 K00430 - csv:101211257 490.73