Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01022 ATGGAATTGGGCCTGAAACTCAAAGGCGTGGAATACCAATACTTTGAGGAAGATTTGCTGAACAGTAAGAGCGATTTGCTACTGAAATACAACCCAATTCACAAGAAGGTACCTGTCCTCGTTCACCATGGAAAACCCATTTCAGAGTCTCTTGTCATCCCCGAATACATTGAAGAAAATTGGAAACACAACCCCATCTTGCCCCAACATTTCCATGAAAGAGCTCTTCCCAGGTTTTGGGCTAAGTATATTGATGACAAAGTTGTGTCTAAGTTAGTGAAAGCTGGTGGAAGCAAAGGAGAAGAGATAAGTAAGGCTTTAGAAGAAGCGAAGGAGGCATTGGAACCACTTGAGAAAGAGCTTAAAAGCAAAAAGTTATTTGGGGGAGAAAGAATTGGGCTTGTTGACATTGTAGGCACCGCCGTAGCCTACTGGTTTCCTGCCACTGAAGAAGCTTTAGGGATTGAGCTGCTAAACAGCCATAAATTTCCAAACTTAAGACAATGGAGTCAAGAACTTGCCAACCACAATGACGTGAAAGAGCTTCTCCCTAAAAAGGATAAGCTTATTGCCTATTTGAAAACTGTTTATGGGAAAAACTAG 603 41.79 MELGLKLKGVEYQYFEEDLLNSKSDLLLKYNPIHKKVPVLVHHGKPISESLVIPEYIEENWKHNPILPQHFHERALPRFWAKYIDDKVVSKLVKAGGSKGEEISKALEEAKEALEPLEKELKSKKLFGGERIGLVDIVGTAVAYWFPATEEALGIELLNSHKFPNLRQWSQELANHNDVKELLPKKDKLIAYLKTVYGKN 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14497875 14499399 + Lsi10G010220.1 Lsi10g01022 672579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01022 200 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 70 197 IPR010987 -
Lsi10g01022 200 Gene3D Glutaredoxin 1 69 - -
Lsi10g01022 200 SUPERFAMILY GST C-terminal domain-like 59 197 IPR036282 -
Lsi10g01022 200 CDD GST_C_Tau 72 194 IPR045074 GO:0004364|GO:0006749
Lsi10g01022 200 Gene3D - 71 200 - -
Lsi10g01022 200 SUPERFAMILY Thioredoxin-like 5 66 IPR036249 -
Lsi10g01022 200 SFLD Glutathione Transferase (cytosolic) 2 196 IPR040079 -
Lsi10g01022 200 SFLD Main.3: Omega- and Tau-like 2 196 IPR045073 -
Lsi10g01022 200 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 65 IPR004045 -
Lsi10g01022 200 PANTHER GLUTATHIONE S-TRANSFERASE U8 2 196 - -
Lsi10g01022 200 Coils Coil 100 120 - -
Lsi10g01022 200 Pfam Glutathione S-transferase, C-terminal domain 87 176 IPR004046 -
Lsi10g01022 200 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 2 196 IPR045073 -
Lsi10g01022 200 Pfam Glutathione S-transferase, N-terminal domain 5 58 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01022 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:105434443 262.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01488 Lsi-Chr1:12966936 Lsi10g01022 Lsi-Chr10:14497875 1.57E-68 dispersed
Lsi01g01490 Lsi-Chr1:12986980 Lsi10g01022 Lsi-Chr10:14497875 1.34E-87 dispersed
Lsi01g01501 Lsi-Chr1:13090525 Lsi10g01022 Lsi-Chr10:14497875 3.28E-73 dispersed
Lsi10g01022 Lsi-Chr10:14497875 Lsi05g01929 Lsi-Chr5:26481032 5.61E-57 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g02381 . 1 210 Glutathione S-transferase Gene Family AT4G02520 59.6 2.3e-64 242.3
Lsi02g02379 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 2.0e-63 239.2
Lsi02g02381 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 3.2e-66 248.4
Lsi02g02379 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 4.3e-63 238.0
Lsi02g02380 . 1 238 Glutathione S-transferase Gene Family AT2G02930 50.2 1.8e-56 216.1
Lsi02g02379 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.2 3.5e-59 225.3
Lsi02g02381 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 6.0e-59 224.6
Lsi02g02381 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.3 2.5e-63 238.8
Lsi02g02379 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 2.1e-62 235.7
Lsi02g02381 . 1 211 Glutathione S-transferase Gene Family AT1G02920 59.7 1.0e-64 243.4
Lsi02g02379 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 1.9e-63 239.2
Lsi02g02379 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 2.1e-67 252.7
Lsi02g02381 . 4 215 Glutathione S-transferase Gene Family AT2G47730 57.7 7.5e-65 244.2
Lsi02g02378 . 1 196 Glutathione S-transferase Gene Family AT3G62760 53.3 3.1e-64 241.9
Lsi02g02381 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 4.7e-48 188.3
Lsi01g01489 . 2 220 Glutathione S-transferase Gene Family AT3G09270 50.9 1.0e-62 236.9
Lsi01g01490 . 3 215 Glutathione S-transferase Gene Family AT3G09270 53.5 4.3e-61 231.5
Lsi01g01498 . 3 219 Glutathione S-transferase Gene Family AT3G09270 50.5 1.8e-59 226.1
Lsi01g01487 . 3 219 Glutathione S-transferase Gene Family AT3G09270 50.7 3.5e-55 211.8
Lsi10g01022 . 1 198 Glutathione S-transferase Gene Family AT3G09270 50.8 1.7e-54 209.5
Lsi01g01486 . 3 209 Glutathione S-transferase Gene Family AT3G09270 50.2 6.2e-52 201.1
Lsi07g00840 . 1 215 Glutathione S-transferase Gene Family AT1G78380 69.8 7.6e-87 317.0
Lsi07g00834 . 1 217 Glutathione S-transferase Gene Family AT1G78380 67.7 4.9e-86 314.3
Lsi07g00835 . 1 215 Glutathione S-transferase Gene Family AT1G78380 67.0 1.4e-80 296.2
Lsi09g00896 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.0 7.9e-68 253.8
Lsi07g00839 . 1 171 Glutathione S-transferase Gene Family AT1G78380 67.8 1.3e-62 236.5
Lsi07g00838 . 1 177 Glutathione S-transferase Gene Family AT1G78380 58.0 5.0e-62 234.6
Lsi07g00833 . 5 196 Glutathione S-transferase Gene Family AT1G78380 52.1 1.7e-54 209.5
Lsi07g00837 . 1 105 Glutathione S-transferase Gene Family AT1G78380 80.0 1.5e-45 179.9
Lsi07g00840 . 7 215 Glutathione S-transferase Gene Family AT1G78370 64.6 8.4e-78 287.0
Lsi07g00834 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.3 7.3e-74 273.9
Lsi07g00835 . 7 215 Glutathione S-transferase Gene Family AT1G78370 61.7 1.1e-72 270.0
Lsi09g00896 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.2 5.3e-64 241.1
Lsi07g00838 . 7 177 Glutathione S-transferase Gene Family AT1G78370 57.3 3.0e-59 225.3
Lsi07g00839 . 2 170 Glutathione S-transferase Gene Family AT1G78370 58.0 1.3e-54 209.9
Lsi07g00833 . 8 196 Glutathione S-transferase Gene Family AT1G78370 51.3 1.8e-51 199.5
Lsi07g00837 . 1 105 Glutathione S-transferase Gene Family AT1G78370 72.4 1.6e-41 166.4
Lsi07g00840 . 1 215 Glutathione S-transferase Gene Family AT1G78340 63.7 2.6e-79 292.0
Lsi07g00834 . 1 217 Glutathione S-transferase Gene Family AT1G78340 62.2 9.9e-79 290.0
Lsi07g00835 . 1 215 Glutathione S-transferase Gene Family AT1G78340 61.9 9.6e-74 273.5
Lsi09g00896 . 4 219 Glutathione S-transferase Gene Family AT1G78340 53.2 5.8e-63 237.7
Lsi07g00838 . 1 177 Glutathione S-transferase Gene Family AT1G78340 54.1 5.7e-58 221.1
Lsi07g00839 . 1 171 Glutathione S-transferase Gene Family AT1G78340 59.6 4.8e-57 218.0
Lsi07g00833 . 5 196 Glutathione S-transferase Gene Family AT1G78340 51.6 5.9e-55 211.1
Lsi07g00837 . 1 105 Glutathione S-transferase Gene Family AT1G78340 78.1 3.8e-46 181.8
Lsi07g00840 . 1 217 Glutathione S-transferase Gene Family AT1G78320 51.6 1.7e-58 222.6
Lsi07g00835 . 1 220 Glutathione S-transferase Gene Family AT1G78320 50.7 1.8e-55 212.6
Lsi07g00840 . 1 219 Glutathione S-transferase Gene Family AT1G17180 69.4 3.7e-89 324.7
Lsi07g00834 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.5 5.2e-83 304.3
Lsi07g00835 . 1 220 Glutathione S-transferase Gene Family AT1G17180 65.5 1.3e-81 299.7
Lsi09g00896 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.2 3.6e-68 255.0
Lsi07g00838 . 1 177 Glutathione S-transferase Gene Family AT1G17180 55.1 1.7e-62 236.1
Lsi07g00839 . 1 173 Glutathione S-transferase Gene Family AT1G17180 61.8 2.2e-62 235.7
Lsi07g00833 . 5 196 Glutathione S-transferase Gene Family AT1G17180 52.6 2.4e-56 215.7
Lsi07g00837 . 1 105 Glutathione S-transferase Gene Family AT1G17180 74.3 2.1e-44 176.0
Lsi07g00840 . 3 218 Glutathione S-transferase Gene Family AT1G17190 59.7 4.4e-74 274.6
Lsi07g00834 . 3 218 Glutathione S-transferase Gene Family AT1G17190 56.5 1.8e-72 269.2
Lsi07g00835 . 3 218 Glutathione S-transferase Gene Family AT1G17190 55.6 5.2e-67 251.1
Lsi07g00839 . 1 172 Glutathione S-transferase Gene Family AT1G17190 58.1 7.0e-56 214.2
Lsi07g00833 . 5 196 Glutathione S-transferase Gene Family AT1G17190 52.1 6.1e-52 201.1
Lsi07g00837 . 3 105 Glutathione S-transferase Gene Family AT1G17190 69.9 6.3e-41 164.5
Lsi07g00840 . 3 215 Glutathione S-transferase Gene Family AT3G43800 59.9 3.8e-73 271.6
Lsi07g00834 . 3 213 Glutathione S-transferase Gene Family AT3G43800 58.6 1.2e-71 266.5
Lsi07g00835 . 3 215 Glutathione S-transferase Gene Family AT3G43800 56.0 2.3e-70 262.3
Lsi07g00839 . 2 166 Glutathione S-transferase Gene Family AT3G43800 56.3 4.7e-55 211.5
Lsi07g00840 . 4 219 Glutathione S-transferase Gene Family AT1G53680 56.2 1.3e-70 263.1
Lsi09g00896 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 1.1e-64 243.4
Lsi07g00834 . 4 219 Glutathione S-transferase Gene Family AT1G53680 54.6 1.4e-64 243.0
Lsi07g00835 . 4 220 Glutathione S-transferase Gene Family AT1G53680 54.8 1.9e-64 242.7
Lsi07g00833 . 6 196 Glutathione S-transferase Gene Family AT1G53680 53.1 7.4e-53 204.1
Lsi07g00839 . 2 173 Glutathione S-transferase Gene Family AT1G53680 50.6 2.1e-47 186.0
Lsi10g00753 . 55 214 Glutathione S-transferase Gene Family AT2G02390 60.8 3.7e-53 204.9
Lsi09g00644 . 1 141 Glutathione S-transferase Gene Family AT2G02390 63.8 2.6e-46 182.2
Lsi10g00753 . 14 209 Glutathione S-transferase Gene Family AT2G02380 59.4 3.4e-66 248.4
Lsi09g00644 . 1 141 Glutathione S-transferase Gene Family AT2G02380 57.4 1.1e-43 173.7
Lsi07g00892 . 1 230 Glutathione S-transferase Gene Family AT5G41210 68.8 1.7e-90 329.3
Lsi07g00892 . 1 230 Glutathione S-transferase Gene Family AT5G41240 65.8 7.8e-86 315.1
Lsi03g02067 . 7 226 Glutathione S-transferase Gene Family AT5G02780 67.1 1.1e-83 306.6
Lsi03g02066 . 13 232 Glutathione S-transferase Gene Family AT5G02780 67.6 2.1e-82 302.4
Lsi04g00829 . 36 272 Glutathione S-transferase Gene Family AT5G02780 60.7 4.5e-77 284.6
Lsi03g02065 . 14 232 Glutathione S-transferase Gene Family AT5G02780 63.5 2.5e-75 278.9
Lsi04g00829 . 34 270 Glutathione S-transferase Gene Family AT3G55040 63.9 3.4e-82 302.0
Lsi03g02067 . 1 227 Glutathione S-transferase Gene Family AT3G55040 60.3 2.7e-79 292.4
Lsi03g02066 . 3 237 Glutathione S-transferase Gene Family AT3G55040 56.8 1.6e-76 283.1
Lsi03g02065 . 4 236 Glutathione S-transferase Gene Family AT3G55040 55.3 4.1e-72 268.5
Lsi03g02067 . 7 226 Glutathione S-transferase Gene Family AT5G02790 70.0 3.5e-90 328.2
Lsi03g02066 . 7 232 Glutathione S-transferase Gene Family AT5G02790 68.3 1.1e-88 323.2
Lsi03g02065 . 8 232 Glutathione S-transferase Gene Family AT5G02790 64.8 1.2e-82 303.1
Lsi04g00829 . 28 272 Glutathione S-transferase Gene Family AT5G02790 57.7 5.3e-78 287.7
Lsi04g00854 . 1 212 Glutathione S-transferase Gene Family AT1G19570 65.3 1.1e-79 293.1
Lsi05g00364 . 65 272 Glutathione S-transferase Gene Family AT1G19570 59.3 1.4e-72 269.6
Lsi04g00854 . 1 211 Glutathione S-transferase Gene Family AT1G75270 68.4 2.6e-84 308.5
Lsi05g00364 . 65 272 Glutathione S-transferase Gene Family AT1G75270 61.7 5.5e-74 274.2
Lsi05g00364 . 54 274 Glutathione S-transferase Gene Family AT5G16710 76.5 3.4e-102 368.2
Lsi04g00854 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.6 7.4e-73 270.8
Lsi04g01839 . 1 267 Glutathione S-transferase Gene Family AT1G77290 70.8 5.4e-111 397.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000231 3 5 1 2 2 8 4 7 6 9 3 5 6 8 8 6 6 1 5 7 8 4 5 5 7 9 4 6 8 4 162
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g01022 Lsi_Chr10 FPKM 28.679972 31.322525 19.603622 18.49687 18.467186 17.979752 18.344746 18.330288 18.575516 17.19062