Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01022 ATGGAATTGGGCCTGAAACTCAAAGGCGTGGAATACCAATACTTTGAGGAAGATTTGCTGAACAGTAAGAGCGATTTGCTACTGAAATACAACCCAATTCACAAGAAGGTACCTGTCCTCGTTCACCATGGAAAACCCATTTCAGAGTCTCTTGTCATCCCCGAATACATTGAAGAAAATTGGAAACACAACCCCATCTTGCCCCAACATTTCCATGAAAGAGCTCTTCCCAGGTTTTGGGCTAAGTATATTGATGACAAAGTTGTGTCTAAGTTAGTGAAAGCTGGTGGAAGCAAAGGAGAAGAGATAAGTAAGGCTTTAGAAGAAGCGAAGGAGGCATTGGAACCACTTGAGAAAGAGCTTAAAAGCAAAAAGTTATTTGGGGGAGAAAGAATTGGGCTTGTTGACATTGTAGGCACCGCCGTAGCCTACTGGTTTCCTGCCACTGAAGAAGCTTTAGGGATTGAGCTGCTAAACAGCCATAAATTTCCAAACTTAAGACAATGGAGTCAAGAACTTGCCAACCACAATGACGTGAAAGAGCTTCTCCCTAAAAAGGATAAGCTTATTGCCTATTTGAAAACTGTTTATGGGAAAAACTAG 603 41.79 MELGLKLKGVEYQYFEEDLLNSKSDLLLKYNPIHKKVPVLVHHGKPISESLVIPEYIEENWKHNPILPQHFHERALPRFWAKYIDDKVVSKLVKAGGSKGEEISKALEEAKEALEPLEKELKSKKLFGGERIGLVDIVGTAVAYWFPATEEALGIELLNSHKFPNLRQWSQELANHNDVKELLPKKDKLIAYLKTVYGKN 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14497875 14499399 + Lsi10G010220.1 Lsi10g01022 672579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01022 200 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 70 197 IPR010987 -
Lsi10g01022 200 Gene3D Glutaredoxin 1 69 - -
Lsi10g01022 200 SUPERFAMILY GST C-terminal domain-like 59 197 IPR036282 -
Lsi10g01022 200 CDD GST_C_Tau 72 194 IPR045074 GO:0004364|GO:0006749
Lsi10g01022 200 Gene3D - 71 200 - -
Lsi10g01022 200 SUPERFAMILY Thioredoxin-like 5 66 IPR036249 -
Lsi10g01022 200 SFLD Glutathione Transferase (cytosolic) 2 196 IPR040079 -
Lsi10g01022 200 SFLD Main.3: Omega- and Tau-like 2 196 IPR045073 -
Lsi10g01022 200 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 65 IPR004045 -
Lsi10g01022 200 PANTHER GLUTATHIONE S-TRANSFERASE U8 2 196 - -
Lsi10g01022 200 Coils Coil 100 120 - -
Lsi10g01022 200 Pfam Glutathione S-transferase, C-terminal domain 87 176 IPR004046 -
Lsi10g01022 200 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 2 196 IPR045073 -
Lsi10g01022 200 Pfam Glutathione S-transferase, N-terminal domain 5 58 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01488 Lsi-Chr1:12966936 Lsi10g01022 Lsi-Chr10:14497875 1.57E-68 dispersed
Lsi01g01490 Lsi-Chr1:12986980 Lsi10g01022 Lsi-Chr10:14497875 1.34E-87 dispersed
Lsi01g01501 Lsi-Chr1:13090525 Lsi10g01022 Lsi-Chr10:14497875 3.28E-73 dispersed
Lsi10g01022 Lsi-Chr10:14497875 Lsi05g01929 Lsi-Chr5:26481032 5.61E-57 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01022 K00799 - csv:105434443 262.692