Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01047 ATGGATTCGGCTCAGCCATCCCCACCACACCTTCATCTTCACACTCTCAGACCCCTCAAGGTACTCGGAAAAGGAGCCATGGGAACCGTCTTCCTCGTCCACGACCGCTTTGCCGATGAACCGGCTCATTTTCCCTTCGCTCTCAAAGTCGTCGAGAAATCCTCTTTCGTCTCTAAACTCGACGCCGAGCGGCGAGCTCGTTGGGAGATTCAGGTTCTTTCTCGTTTGTCCTTCCCTAAACCCCAATCCTTCCTCCCCGACATTATCGGTTCCTTCGAATCCGATGAGTTTTTGGGCTGGGCCGTTCCGTATTGTCCTGGTGGCGACCTTAACGTCTTGCGTTACCGTCAATTGGACCGGGTTTTCTCGCCGGCAGTCATTCGGTTTTATTTGGCCGAGATCATCTGTGCGCTCGACCATCTTCATAGCATGGGCATCGTCTACCGAGATTTGAAGCCGGAGAATGTGTTGATTCAACAATCGGGTCACGTTACTCTCACGGACTTTGATTTGTCGCGTAGTTTGACACGCAGAACAGTAAAAGACGTCGTCTCTCTTGATAACTCCGGTCACGAGAAGCCGCCGATGACCGTTCGGCCAAAACACGGGCGGAACTTGACACGATGGATTATGGCGACCTCTAATGTTAAAAACGGGTTAAAAAAGGCTAAATCGGCTCGGGTTAGTCCTGTGAGTCGCCGGAAGCCGAGTTTCACCAATGGTGAGCGGTCGAATTCGTTCGTCGGAACGGAGGAGTATGTCTCGCCGGAAGTCGTTCGAGGCGACGGTCATGAATTCGCCGTCGACTGGTGGGCCCTGGGGATTCTCACGTACGAGATGCTCTACGGGACGACGCCGTTTAAGGGGAAGAACAGGAAAGAGACGTTTCGAAACGTTCTGGTCAAAGCTCCGGAGTTGATTGGAAAGCGTTCAGATTTAACGGATTTGATCGAACGGTTGCTGGTAAAGGACCCCACTAAACGGTTGGGGTACGTACGGGGCGCGTGCGAGATCAAAGAGCATGCGTTTTTTAACGGCGTTAAGTGGGACCTATTAACCGAAGTGACGCGACCGCCATTTTTACCTCCTCGTGAAGAAACGGAATGGGCGGAGAATTTAACGCTCGGTTGTATGAGTATAACGGAATACTTTCACAGACAGAGATCGCCGCCTTCGTTTCCACCGTCGCCGTCGTCAACTCCGTCGACCTCCTTCAGTTGGCAGAATAACACGTCATTGACGGAGTTCTGA 1251 52.28 MDSAQPSPPHLHLHTLRPLKVLGKGAMGTVFLVHDRFADEPAHFPFALKVVEKSSFVSKLDAERRARWEIQVLSRLSFPKPQSFLPDIIGSFESDEFLGWAVPYCPGGDLNVLRYRQLDRVFSPAVIRFYLAEIICALDHLHSMGIVYRDLKPENVLIQQSGHVTLTDFDLSRSLTRRTVKDVVSLDNSGHEKPPMTVRPKHGRNLTRWIMATSNVKNGLKKAKSARVSPVSRRKPSFTNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTKRLGYVRGACEIKEHAFFNGVKWDLLTEVTRPPFLPPREETEWAENLTLGCMSITEYFHRQRSPPSFPPSPSSTPSTSFSWQNNTSLTEF 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14698517 14699767 - Lsi10G010470.1 Lsi10g01047 672604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01047 416 Gene3D Phosphorylase Kinase; domain 1 18 108 - -
Lsi10g01047 416 Gene3D Transferase(Phosphotransferase) domain 1 241 363 - -
Lsi10g01047 416 ProSiteProfiles Protein kinase domain profile. 16 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01047 416 MobiDBLite consensus disorder prediction 224 243 - -
Lsi10g01047 416 SUPERFAMILY Protein kinase-like (PK-like) 17 411 IPR011009 -
Lsi10g01047 416 SMART serkin_6 16 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01047 416 MobiDBLite consensus disorder prediction 386 416 - -
Lsi10g01047 416 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 11 390 - -
Lsi10g01047 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Lsi10g01047 416 Pfam Protein kinase domain 19 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01047 416 Pfam Protein kinase domain 239 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01047 416 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524
Lsi10g01047 416 PANTHER FLIPPASE KINASE 1-RELATED 11 390 - -
Lsi10g01047 416 MobiDBLite consensus disorder prediction 399 416 - -
Lsi10g01047 416 Gene3D Transferase(Phosphotransferase) domain 1 109 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02126 Lsi-Chr2:27482479 Lsi10g01047 Lsi-Chr10:14698517 1.75E-91 dispersed
Lsi10g01047 Lsi-Chr10:14698517 Lsi10g01321 Lsi-Chr10:17417465 1.98E-71 dispersed
Lsi10g01047 Lsi-Chr10:14698517 Lsi01g00506 Lsi-Chr1:4134269 1.94E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83969 PF00069 Pkinase 5.90E-28 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01047 - K08286 csv:101207338 733.021