Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01048 ATGGGATCCATGAATTCAAACAATTGGCTTTCCTTTCCACTATCACCTACTAATCCTTCTTTACCACCACATCTTCAAACAACAACTCATTCCCATCATTTCTCTTTGGGAAATTTGGAGAATGATCATAATATGGACATCCCATTTCAAACCCACCACGAGTGGAATCTGATAAGTAATCAAGGTGGTGGTGAAGTTCCAAAAATAGCAGATTTTTTAGGAGTAAGCAAGGCAGAAAATGAGACAGATCTCATTGGGTTTAATGAAATTCATCATCAAAGTAATGATACAGATTATTTGTTTCCAATCACAAGATTAGTTCCTGTTCATCAACAACAACAACAACAACAACCAACTGCTCCTCCTCCTAATATAAATCTTGACTCTTCTACTAACTTTGACCTTCAAGATAATTCCAACTGTTTGCAATCTTTAACCCTTTCAATGGGTAGTGGCAAACCCTCTACTTGTGAAACAACATCCACCCCTGAAAATAATACCCCCAATAATAATAATAACAATAATAATACGACTCTTGATGTCACCCCTCGAAGAACTTTGGATACTTTCGGCCAAAGAACTTCCATTTATCGCGGTGTCACCAGGCATAGATGGACAGGAAGGTATGAAGCACATTTGTGGGATAATAGTTGTAGAAGGGAAGGGCAGTCCAGGAAGGGTCGGCAAGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAATACTGGGGAACATCCACCACAACAAATTTTCCTATTAGTAACTATGAGAAGGAAGTTGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTGCAATTAGAAGGAAAAGTAGTGGATTTTCAAGGGGAGCATCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCTAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACAGAAGAGGAAGCAGCAGAAGCATATGACATAGCAGCGATAAAATTCAGAGGACTAAATGCAGTGACAAACTTTGACATGAGTCGCTACGACGTGAAAAGCATATTAGAGAGCAACACACTCCCGATCGGCGGTGGAGCTGCAAAGAGACTAAAAGAGGCTCAAGCCATGGAATCGTCTCGAAAGCGAGACGAAATGATTGCCTTAGGTTCCTCTTCCTCCTCTTCCTCTTGCTTCCAATATGGAACCTCTTCCTCCTCTACGAATAATTCCTCCCATTACCCTAATTTACTCCAACAACCAAATCTCAATATGGACCATCACCTTCAAACCCAACCTTTGCTCTCTCTTCAAAACCACCATGACATTTCTCAATACACCCACCACCATCCCTCCTCATTCCACCACCCTTCTTCTTCTTACATCCACCACTCATCTGATCATTCCCCTTATCCTAACAACAACAACAACAACAACCATCCGTTCTACAGTGGCGGATATCTTCATAATCATCCCGCTTTACTTCACGGGATGATCAACATGGGCGGTGGAAGCGGCGGCGGAGGAACCTCTAGTTTGGACACTAATAACAATACTAATGCCTTGAATCATTTTGAGAATAATGCTAATGGAGGAGGAGGGTATCTTGGGAATGCATTTGGGATGGGTTCTACTTCGAACGGCGGCGCGACCGCAGCGGAGGAATATGCGCTGGTTAAGGTTGATTATGACATGCCTAATTCTGGTGGGTACGGGGGTTGGTCCGGGGATTCAGTTCAAGGTTCTAACGCTGGGGTTTTCTCTATGTGGAACGATTGA 1800 42.72 MGSMNSNNWLSFPLSPTNPSLPPHLQTTTHSHHFSLGNLENDHNMDIPFQTHHEWNLISNQGGGEVPKIADFLGVSKAENETDLIGFNEIHHQSNDTDYLFPITRLVPVHQQQQQQQPTAPPPNINLDSSTNFDLQDNSNCLQSLTLSMGSGKPSTCETTSTPENNTPNNNNNNNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAMESSRKRDEMIALGSSSSSSSCFQYGTSSSSTNNSSHYPNLLQQPNLNMDHHLQTQPLLSLQNHHDISQYTHHHPSSFHHPSSSYIHHSSDHSPYPNNNNNNNHPFYSGGYLHNHPALLHGMINMGGGSGGGGTSSLDTNNNTNALNHFENNANGGGGYLGNAFGMGSTSNGGATAAEEYALVKVDYDMPNSGGYGGWSGDSVQGSNAGVFSMWND 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14712752 14716262 - Lsi10G010480.1 Lsi10g01048 672605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01048 599 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 8 598 - -
Lsi10g01048 599 SUPERFAMILY DNA-binding domain 294 355 IPR016177 GO:0003677
Lsi10g01048 599 MobiDBLite consensus disorder prediction 109 182 - -
Lsi10g01048 599 MobiDBLite consensus disorder prediction 453 476 - -
Lsi10g01048 599 CDD AP2 195 261 IPR001471 GO:0003700|GO:0006355
Lsi10g01048 599 PRINTS Ethylene responsive element binding protein signature 197 208 IPR001471 GO:0003700|GO:0006355
Lsi10g01048 599 PRINTS Ethylene responsive element binding protein signature 335 355 IPR001471 GO:0003700|GO:0006355
Lsi10g01048 599 SUPERFAMILY DNA-binding domain 195 261 IPR016177 GO:0003677
Lsi10g01048 599 SMART rav1_2 295 359 IPR001471 GO:0003700|GO:0006355
Lsi10g01048 599 SMART rav1_2 196 265 IPR001471 GO:0003700|GO:0006355
Lsi10g01048 599 Gene3D AP2/ERF domain 196 261 IPR036955 GO:0003700|GO:0006355
Lsi10g01048 599 Gene3D AP2/ERF domain 295 355 IPR036955 GO:0003700|GO:0006355
Lsi10g01048 599 ProSiteProfiles AP2/ERF domain profile. 196 259 IPR001471 GO:0003700|GO:0006355
Lsi10g01048 599 Pfam AP2 domain 196 251 IPR001471 GO:0003700|GO:0006355
Lsi10g01048 599 Pfam AP2 domain 296 345 IPR001471 GO:0003700|GO:0006355
Lsi10g01048 599 MobiDBLite consensus disorder prediction 457 476 - -
Lsi10g01048 599 CDD AP2 294 355 IPR001471 GO:0003700|GO:0006355
Lsi10g01048 599 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 598 - -
Lsi10g01048 599 ProSiteProfiles AP2/ERF domain profile. 295 353 IPR001471 GO:0003700|GO:0006355
Lsi10g01048 599 MobiDBLite consensus disorder prediction 399 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00782 Lsi-Chr5:11240033 Lsi10g01048 Lsi-Chr10:14712752 5.10E-120 dispersed
Lsi06g01180 Lsi-Chr6:22096693 Lsi10g01048 Lsi-Chr10:14712752 5.99E-122 dispersed
Lsi07g00615 Lsi-Chr7:6626254 Lsi10g01048 Lsi-Chr10:14712752 9.02E-06 dispersed
Lsi08g01547 Lsi-Chr8:23533820 Lsi10g01048 Lsi-Chr10:14712752 9.93E-61 dispersed
Lsi10g01048 Lsi-Chr10:14712752 Lsi11g00935 Lsi-Chr11:13539557 6.49E-78 dispersed
Lsi10g01048 Lsi-Chr10:14712752 Lsi01g00869 Lsi-Chr1:7000981 1.53E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26055 PF00847 AP2 2.90E-09 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01048 K09285 - csv:101207097 951.814