Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01052 ATGACTGATCCTTACTCCATCAACAATAATAATGGCTCTTTTGGTAATTTATACCCTCTTCACCACTACTTTTCTTCTTCTTCTTCTTCCAATTCTTATTCTCCTTATCATGATCATCTCTTCTCTCTTTCTTACTCCAATGATAATAATAATAATACCCTAAAAAACAACATGGCCTCTCCTCATTATTCTTCTTCTTCCTCTTCTCAAGTCCTTCTTCCCCTTTTAAGCTTAAGCCCAGCAAGAGTAGTACAAGATGATGATAATGAAGATCTATCATTTTCCAAAGACTTGATGAAGAACTTGTGCAAGCCAGGTGGTGGTGGTGGTACTTGTGAAGTAGATGATGTTGATACTAATAATAATGATGATGATGATAATGATAATCGAAGTGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTCCTTCTAATTCTGATTTGATTTTGAGGCTTTCTTCAACTGAGATCTCAGATCAAGAAGATCAACTTCCTAATTATTCCTCTTCTAATTCCAATAATAATATTATTACTTCTACTACTACTGCTGCTGCTGGACTTAATAAGGGTCAATATTGGATTCCAACTCCTGCTCAGATTCTTATTGGTCCAACTCAATTCTCTTGCCCTCTTTGCTTCAAGACTTTCAATAGATACAACAACATGCAGTTTTGGGGATTTTCAAAAGATGAGAACAAATCTTCTTCCCTGGTGTATTTTTCAGAATTTGGTTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCATTAAAAGACTTCAGAACTCTTCAAACACATTATAAAAGAAAGCATGGAATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTGAGAGGAGATTGGAGAACTCATGAGAAAAATTGTGGGAAGCTTTGGCATTGCACTTGTGGATCTGATTTTAAGCATAAAAGATCTCTTAAAGATCACATCAAAGCCTTTGGACATGGCCATGCAGCTTATGGGATTGATCACTCTTTTGATGAAGATGATGAGCCAGCTTCTGAGATTGAAACATGA 1050 36.48 MTDPYSINNNNGSFGNLYPLHHYFSSSSSSNSYSPYHDHLFSLSYSNDNNNNTLKNNMASPHYSSSSSSQVLLPLLSLSPARVVQDDDNEDLSFSKDLMKNLCKPGGGGGTCEVDDVDTNNNDDDDNDNRSVTVALHLGLPTPPSNSDLILRLSSTEISDQEDQLPNYSSSNSNNNIITSTTTAAAGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQFWGFSKDENKSSSLVYFSEFGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDHSFDEDDEPASEIET 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14750518 14753355 - Lsi10G010520.1 Lsi10g01052 672609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01052 349 PANTHER ZINC FINGER PROTEIN WIP2 1 348 IPR043584 GO:0003700|GO:0010468
Lsi10g01052 349 SUPERFAMILY beta-beta-alpha zinc fingers 258 297 IPR036236 -
Lsi10g01052 349 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 348 - -
Lsi10g01052 349 Gene3D Classic Zinc Finger 243 325 - -
Lsi10g01052 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 304 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01027 Lsi-Chr9:14756298 Lsi10g01052 Lsi-Chr10:14750518 2.25E-75 dispersed
Lsi10g01052 Lsi-Chr10:14750518 Lsi02g01944 Lsi-Chr2:25337855 7.36E-19 dispersed
Lsi05g00512 Lsi-Chr5:6414022 Lsi10g01052 Lsi-Chr10:14750518 1.63E-08 transposed
Lsi10g01052 Lsi-Chr10:14750518 Lsi02g02581 Lsi-Chr2:32280466 1.06E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26056 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01052 - - bhj:120089206 491.5