Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01052 | ATGACTGATCCTTACTCCATCAACAATAATAATGGCTCTTTTGGTAATTTATACCCTCTTCACCACTACTTTTCTTCTTCTTCTTCTTCCAATTCTTATTCTCCTTATCATGATCATCTCTTCTCTCTTTCTTACTCCAATGATAATAATAATAATACCCTAAAAAACAACATGGCCTCTCCTCATTATTCTTCTTCTTCCTCTTCTCAAGTCCTTCTTCCCCTTTTAAGCTTAAGCCCAGCAAGAGTAGTACAAGATGATGATAATGAAGATCTATCATTTTCCAAAGACTTGATGAAGAACTTGTGCAAGCCAGGTGGTGGTGGTGGTACTTGTGAAGTAGATGATGTTGATACTAATAATAATGATGATGATGATAATGATAATCGAAGTGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTCCTTCTAATTCTGATTTGATTTTGAGGCTTTCTTCAACTGAGATCTCAGATCAAGAAGATCAACTTCCTAATTATTCCTCTTCTAATTCCAATAATAATATTATTACTTCTACTACTACTGCTGCTGCTGGACTTAATAAGGGTCAATATTGGATTCCAACTCCTGCTCAGATTCTTATTGGTCCAACTCAATTCTCTTGCCCTCTTTGCTTCAAGACTTTCAATAGATACAACAACATGCAGTTTTGGGGATTTTCAAAAGATGAGAACAAATCTTCTTCCCTGGTGTATTTTTCAGAATTTGGTTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCATTAAAAGACTTCAGAACTCTTCAAACACATTATAAAAGAAAGCATGGAATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTGAGAGGAGATTGGAGAACTCATGAGAAAAATTGTGGGAAGCTTTGGCATTGCACTTGTGGATCTGATTTTAAGCATAAAAGATCTCTTAAAGATCACATCAAAGCCTTTGGACATGGCCATGCAGCTTATGGGATTGATCACTCTTTTGATGAAGATGATGAGCCAGCTTCTGAGATTGAAACATGA | 1050 | 36.48 | MTDPYSINNNNGSFGNLYPLHHYFSSSSSSNSYSPYHDHLFSLSYSNDNNNNTLKNNMASPHYSSSSSSQVLLPLLSLSPARVVQDDDNEDLSFSKDLMKNLCKPGGGGGTCEVDDVDTNNNDDDDNDNRSVTVALHLGLPTPPSNSDLILRLSSTEISDQEDQLPNYSSSNSNNNIITSTTTAAAGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQFWGFSKDENKSSSLVYFSEFGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDHSFDEDDEPASEIET | 349 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 14750518 | 14753355 | - | Lsi10G010520.1 | Lsi10g01052 | 672609 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01052 | 349 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 348 | IPR043584 | GO:0003700|GO:0010468 | |
Lsi10g01052 | 349 | SUPERFAMILY | beta-beta-alpha zinc fingers | 258 | 297 | IPR036236 | - | |
Lsi10g01052 | 349 | PANTHER | TESTA 1 PROTEIN, PUTATIVE-RELATED | 1 | 348 | - | - | |
Lsi10g01052 | 349 | Gene3D | Classic Zinc Finger | 243 | 325 | - | - | |
Lsi10g01052 | 349 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 277 | 304 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi09g01027 | Lsi-Chr9:14756298 | Lsi10g01052 | Lsi-Chr10:14750518 | 2.25E-75 | dispersed | |
Lsi10g01052 | Lsi-Chr10:14750518 | Lsi02g01944 | Lsi-Chr2:25337855 | 7.36E-19 | dispersed | |
Lsi05g00512 | Lsi-Chr5:6414022 | Lsi10g01052 | Lsi-Chr10:14750518 | 1.63E-08 | transposed | |
Lsi10g01052 | Lsi-Chr10:14750518 | Lsi02g02581 | Lsi-Chr2:32280466 | 1.06E-81 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26056 | None | None | None | None | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01052 | - | - | bhj:120089206 | 491.5 |