Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01067 ATGGGATACATTCCCAGCGGTTGTTTCCTGAATCTAGGGCTGTGGATTTCCAGAATTTTCCATCCAAGTGAGTTCGTCTCTTTCTCTGACTTGATTTTGCAAGATTCTGAAGGCATGCAGTCAAAGTCTAAAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCATACTAGTAGTTATTCTGAACCTTGGTGGCGTAGCATTGGGTACAATCATATCTCCCCGCCAGCAGCAGGAGGAAATGTGTCAAATTCAACATCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCCATGTCAAATGATGATTTAAATGAAGACGATGATGATGACACCACAAAAGATTCACATGGTATGGCCCTCTTGGCGTTTTTGCTTGCTAAATCATGTTATAGTTCAAAGAAAGGCACTTATGCAAGTTATGGGCAAGTACAAGACAACTGTCAGCACGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGCGATGGCTGCCTACGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCTATGAGACGGGCCAGGGGTAGTGGTGGACGATTTGCCAAGAAAAATGAAGCTAATTCCTTGAGTTCTACTATGAAGGACAAGGACTCTGGTTCTGGTCAAGCTATCTCGTCGCACTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCCTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGCAAGGACCCAGTTGCATGAAGCATATGAAGCTCGAAGTTATGCGAACGGAAGTAGCCAATTCCATAGTTACAGTAGCTTCCAAGCTTCTTCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTATCTCAGAAAATCAGGCTGCACAGAGGCGTCTTGCCATCAACTCCCAGATGCTTTCCCTTCGGTCTCTCTTCAATCAAAACCAGCGGCCGCCATTGATAGCCACCAAGAAATGCTCTGATGATGTTTTGAGTAGAAGAAATTTCCACTCATTTCATTATTCTGCTTCTCGTTGTTGCATTGTGCGTGCAAGGGAGACAGATTCTCAACAGTTTGAGGTTGACCCAGATAAGGCCAGGCAAGCCCTTCAAGAGCTTGATCAGCAGCTTCAATCTTTCTCCAAGAAACAAGTCACTTCTCCCAAGAAGAAAGTTGAAGATAGGAAGCTTCCAAGAAGTCAAATGAGAGGAGAAATGACAGAGATTTCAGGGGCCCTTTTAGCAAATTCAGCTGTTGCTCTCTTCATCTTCTCCATTTTCTACAATGTGCTGTTTTATGCAGTCATAAAGCCTTCCATTGATGGTCCATTACCAAGTTCAGTCAGTTCTGACTTTGAGAGAGAATCTACTGAGCCATCAGTTTTGCAGCAGCTTCCACTTTCATCTGTGTTCATATCCCCCTCACTTCTTAGTTAA 1731 44.83 MGYIPSGCFLNLGLWISRIFHPSEFVSFSDLILQDSEGMQSKSKSVNQLESEPPNMQHTSSYSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHGMALLAFLLAKSCYSSKKGTYASYGQVQDNCQHAVSAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGAMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSLSSTMKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEARTQLHEAYEARSYANGSSQFHSYSSFQASSYGLRSGERGEDGDCSGQQRSISENQAAQRRLAINSQMLSLRSLFNQNQRPPLIATKKCSDDVLSRRNFHSFHYSASRCCIVRARETDSQQFEVDPDKARQALQELDQQLQSFSKKQVTSPKKKVEDRKLPRSQMRGEMTEISGALLANSAVALFIFSIFYNVLFYAVIKPSIDGPLPSSVSSDFERESTEPSVLQQLPLSSVFISPSLLS 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14907187 14914731 + Lsi10G010670.1 Lsi10g01067 672624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01067 576 Gene3D - 225 287 - -
Lsi10g01067 576 MobiDBLite consensus disorder prediction 82 119 - -
Lsi10g01067 576 PRINTS CCAAT-binding transcription factor subunit B signature 228 250 IPR001289 GO:0003700|GO:0006355
Lsi10g01067 576 PRINTS CCAAT-binding transcription factor subunit B signature 259 282 IPR001289 GO:0003700|GO:0006355
Lsi10g01067 576 MobiDBLite consensus disorder prediction 264 319 - -
Lsi10g01067 576 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 227 282 IPR001289 GO:0003700|GO:0006355
Lsi10g01067 576 ProSitePatterns NF-YA/HAP2 subunit signature. 230 250 IPR018362 GO:0003677|GO:0016602
Lsi10g01067 576 MobiDBLite consensus disorder prediction 285 315 - -
Lsi10g01067 576 MobiDBLite consensus disorder prediction 264 279 - -
Lsi10g01067 576 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 68 388 - -
Lsi10g01067 576 SMART cbf3 224 285 IPR001289 GO:0003700|GO:0006355
Lsi10g01067 576 MobiDBLite consensus disorder prediction 368 389 - -
Lsi10g01067 576 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 68 388 IPR001289 GO:0003700|GO:0006355
Lsi10g01067 576 ProSiteProfiles NF-YA/HAP2 family profile. 225 285 IPR001289 GO:0003700|GO:0006355
Lsi10g01067 576 MobiDBLite consensus disorder prediction 43 62 - -
Lsi10g01067 576 MobiDBLite consensus disorder prediction 82 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01877 Lsi-Chr1:21286555 Lsi10g01067 Lsi-Chr10:14907187 3.55E-33 dispersed
Lsi03g01809 Lsi-Chr3:29531882 Lsi10g01067 Lsi-Chr10:14907187 3.38E-29 dispersed
Lsi01g00084 Lsi-Chr1:819804 Lsi10g01067 Lsi-Chr10:14907187 3.59E-34 transposed
Lsi10g01067 Lsi-Chr10:14907187 Lsi02g02572 Lsi-Chr2:32168608 2.43E-52 wgd
Lsi10g01067 Lsi-Chr10:14907187 Lsi06g00527 Lsi-Chr6:6472242 3.65E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26059 PF02045 CBFB_NFYA 4.00E-26 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01067 K08064 - csv:101212961 612.838