Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01089 ATGTCTTCTTCCGGAATCTCTATCCAGAGCGCCGAATTGTCAGATGCCGTTCATCAACTAGTAATTTGCGACCAGTTGGAAACGGGAAAGAAGGTAGAGATTCAAGGAACGGGGAATGGGAGTCATGATGGGGCTTGTGCAATTTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTGAGAGGCTGTGAGCACGCCTATTGTGCGACTTGCATCCTTCGATGGGCCTCATACACTCCAAAACCGACTTGTCCACAATGTAAACATCCATTTGAGTTCTTGATCGTTCATCGTTCTCTTGATGGGAGCATCCACGACTATATGTTTGAGGAGAGCGTATGCCTGCTTCTTAGAGCTTCGTGGTATAAACCACTGATCATTGAAGAACGGGAGGAAACCTATGATGATCTTGAGGAAGATCAGTACTATCCTTATGAAGATGACGATGAAGAGTTTGAGGATGCTTACCTGGGTGTATCACCAAGTCTCCGTATTGGAAATCGAAGGTGGGGAGACAATGGCTACGTGAGGGCAGGTCGACAAGAAGCCCGACCAGTTCTTAGGCCAGAGTTCGTTGGACCTAGTTCATCGAGGGAGCCTGTAACGAAACACACTTCCAAAGACAAAACAGGTCGACGAGCTAAAAGGGCCTTGAAACGGGAAGCTGCTGATAAAGCAGCAGCAACTAAGCATCAAGAACATCTAGCTAGGTTTGGCCGGAAGTGA 729 46.78 MSSSGISIQSAELSDAVHQLVICDQLETGKKVEIQGTGNGSHDGACAICLNKIALQETALVRGCEHAYCATCILRWASYTPKPTCPQCKHPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYKPLIIEEREETYDDLEEDQYYPYEDDDEEFEDAYLGVSPSLRIGNRRWGDNGYVRAGRQEARPVLRPEFVGPSSSREPVTKHTSKDKTGRRAKRALKREAADKAAATKHQEHLARFGRK 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15186751 15190363 + Lsi10G010890.1 Lsi10g01089 672646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01089 242 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Lsi10g01089 242 Pfam Ring finger domain 45 89 IPR001841 -
Lsi10g01089 242 SUPERFAMILY RING/U-box 40 96 - -
Lsi10g01089 242 ProSiteProfiles Zinc finger RING-type profile. 46 89 IPR001841 -
Lsi10g01089 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 112 IPR013083 -
Lsi10g01089 242 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 242 - -
Lsi10g01089 242 SMART ring_2 46 88 IPR001841 -
Lsi10g01089 242 MobiDBLite consensus disorder prediction 216 242 - -
Lsi10g01089 242 MobiDBLite consensus disorder prediction 191 242 - -
Lsi10g01089 242 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01410 Lsi-Chr9:22097973 Lsi10g01089 Lsi-Chr10:15186751 1.77E-06 dispersed
Lsi10g01089 Lsi-Chr10:15186751 Lsi10g01091 Lsi-Chr10:15192110 1.30E-13 dispersed
Lsi10g01089 Lsi-Chr10:15186751 Lsi10g01090 Lsi-Chr10:15190659 3.64E-78 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01089 - - csv:101206609 397.512