Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01112 ATGGAACAAAGAAAGTACAGAGCCGATCTTCTTTCATCCGTCTTCCTTGTCCTCCTCCTTTTCCTTTCCCTTTCCGGCCGATCCGCCGTTCACGCCTACAAGAACTACACCGTCGGAGATTCCCTCGGCTGGTTCGACAAATTGGAGAAACCTGCCGTCGATTACCAAGAATGGACCGCCGGCAAAACCTTCGGCCTCGGCGATTTTCTAATTTTTAACACGGACAACAATCACTCGGTTGTGCAAACATTCAATTTCACCACATACAAGCTTTGTGACTACGACGACGCATCGGAAAACGACACGACGGAATGGTCCGCCGCCGACCCATCGGCGACCAATCCCTACGCCGTGACGGTGGCCGTCCCCCTGGTGAAAGAAGGGACCAACTATTTCTTCTCCGGCAACTACGATGGAGAGCAGTGCCAAAATGGGCAACAATTCAAAATAAACGTCACTCACGGACAGGGCCTCCCGAAGAGCATGAGAGATTCTTCCGACGAAGCTCCGGCACCGGTAGCTCCCGACACCGGCGACCAAACCGAATCTGCACCCGACACTATTGTCCCTTCCAGCTTTGACAATCCTCGAAACGACGTCGCTGATAACGACAAGGAAGCTTCGGGCTCCGTTTCGTTATCGCTTTGCTTCAAGTTTAATGAGCTTTTCTTCCTCTTAATTGGTATTGCCTCTGCCTGTCTTTTTCTTTGTACTGAGTGA 720 51.39 MEQRKYRADLLSSVFLVLLLFLSLSGRSAVHAYKNYTVGDSLGWFDKLEKPAVDYQEWTAGKTFGLGDFLIFNTDNNHSVVQTFNFTTYKLCDYDDASENDTTEWSAADPSATNPYAVTVAVPLVKEGTNYFFSGNYDGEQCQNGQQFKINVTHGQGLPKSMRDSSDEAPAPVAPDTGDQTESAPDTIVPSSFDNPRNDVADNDKEASGSVSLSLCFKFNELFFLLIGIASACLFLCTE 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15387657 15391550 - Lsi10G011120.1 Lsi10g01112 672669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01112 239 PANTHER BNAA08G26900D PROTEIN 10 177 - -
Lsi10g01112 239 MobiDBLite consensus disorder prediction 180 197 - -
Lsi10g01112 239 CDD Phytocyanin 34 152 - -
Lsi10g01112 239 ProSiteProfiles Phytocyanin domain profile. 34 154 IPR003245 GO:0009055
Lsi10g01112 239 Gene3D - 33 157 IPR008972 -
Lsi10g01112 239 MobiDBLite consensus disorder prediction 156 204 - -
Lsi10g01112 239 SUPERFAMILY Cupredoxins 34 152 IPR008972 -
Lsi10g01112 239 PANTHER BLUE COPPER PROTEIN 10 177 IPR039391 GO:0009055
Lsi10g01112 239 Pfam Plastocyanin-like domain 44 146 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01112 - - - cpep:111776932 437.187
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01906 Lsi-Chr9:27913524 Lsi10g01112 Lsi-Chr10:15387657 2.09E-36 dispersed
Lsi10g01112 Lsi-Chr10:15387657 Lsi02g02712 Lsi-Chr2:33455460 1.40E-07 dispersed
Lsi10g01112 Lsi-Chr10:15387657 Lsi08g00986 Lsi-Chr8:18327551 1.78E-12 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00157 . 11 139 Phytocyanin Superfamily AT1G48940 53.3 7.6e-37 150.6
Lsi03g01524 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 5.0e-38 154.5
Lsi08g01251 CCT 72 227 Phytocyanin Superfamily AT2G25060 56.1 1.6e-45 179.5
Lsi03g01524 . 13 178 Phytocyanin Superfamily AT5G15350 52.1 1.2e-47 186.4
Lsi08g01251 CCT 69 229 Phytocyanin Superfamily AT4G31840 55.3 1.4e-46 183.0
Lsi02g00157 . 8 121 Phytocyanin Superfamily AT3G18590 61.2 3.6e-37 151.8
Lsi02g00157 . 8 121 Phytocyanin Superfamily AT3G18590 61.2 3.6e-37 151.8
Lsi02g00157 . 11 139 Phytocyanin Superfamily AT1G48940 53.3 7.6e-37 150.6
Lsi08g01251 CCT 67 234 Phytocyanin Superfamily AT5G25090 50.9 1.2e-37 153.3
Lsi08g01251 CCT 72 227 Phytocyanin Superfamily AT2G25060 56.1 1.6e-45 179.5
Lsi08g01251 CCT 69 229 Phytocyanin Superfamily AT4G31840 55.3 1.4e-46 183.0
Lsi03g01524 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 5.0e-38 154.5
Lsi03g01524 . 13 178 Phytocyanin Superfamily AT5G15350 52.1 1.2e-47 186.4
Lsi10g01112 . 19 229 Phytocyanin Superfamily AT1G08500 58.0 4.7e-63 238.0
Lsi06g00445 . 30 135 Phytocyanin Superfamily AT2G27035 58.5 1.4e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g01112 Lsi_Chr10 FPKM 0.0 0.0 0.0 0.0 0.278047 0.32878 0.261118 0.0 0.0 0.0