Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01112 ATGGAACAAAGAAAGTACAGAGCCGATCTTCTTTCATCCGTCTTCCTTGTCCTCCTCCTTTTCCTTTCCCTTTCCGGCCGATCCGCCGTTCACGCCTACAAGAACTACACCGTCGGAGATTCCCTCGGCTGGTTCGACAAATTGGAGAAACCTGCCGTCGATTACCAAGAATGGACCGCCGGCAAAACCTTCGGCCTCGGCGATTTTCTAATTTTTAACACGGACAACAATCACTCGGTTGTGCAAACATTCAATTTCACCACATACAAGCTTTGTGACTACGACGACGCATCGGAAAACGACACGACGGAATGGTCCGCCGCCGACCCATCGGCGACCAATCCCTACGCCGTGACGGTGGCCGTCCCCCTGGTGAAAGAAGGGACCAACTATTTCTTCTCCGGCAACTACGATGGAGAGCAGTGCCAAAATGGGCAACAATTCAAAATAAACGTCACTCACGGACAGGGCCTCCCGAAGAGCATGAGAGATTCTTCCGACGAAGCTCCGGCACCGGTAGCTCCCGACACCGGCGACCAAACCGAATCTGCACCCGACACTATTGTCCCTTCCAGCTTTGACAATCCTCGAAACGACGTCGCTGATAACGACAAGGAAGCTTCGGGCTCCGTTTCGTTATCGCTTTGCTTCAAGTTTAATGAGCTTTTCTTCCTCTTAATTGGTATTGCCTCTGCCTGTCTTTTTCTTTGTACTGAGTGA 720 51.39 MEQRKYRADLLSSVFLVLLLFLSLSGRSAVHAYKNYTVGDSLGWFDKLEKPAVDYQEWTAGKTFGLGDFLIFNTDNNHSVVQTFNFTTYKLCDYDDASENDTTEWSAADPSATNPYAVTVAVPLVKEGTNYFFSGNYDGEQCQNGQQFKINVTHGQGLPKSMRDSSDEAPAPVAPDTGDQTESAPDTIVPSSFDNPRNDVADNDKEASGSVSLSLCFKFNELFFLLIGIASACLFLCTE 239
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 15387657 15391550 - Lsi10G011120.1 Lsi10g01112 672669
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01112 239 PANTHER BNAA08G26900D PROTEIN 10 177 - -
Lsi10g01112 239 MobiDBLite consensus disorder prediction 180 197 - -
Lsi10g01112 239 CDD Phytocyanin 34 152 - -
Lsi10g01112 239 ProSiteProfiles Phytocyanin domain profile. 34 154 IPR003245 GO:0009055
Lsi10g01112 239 Gene3D - 33 157 IPR008972 -
Lsi10g01112 239 MobiDBLite consensus disorder prediction 156 204 - -
Lsi10g01112 239 SUPERFAMILY Cupredoxins 34 152 IPR008972 -
Lsi10g01112 239 PANTHER BLUE COPPER PROTEIN 10 177 IPR039391 GO:0009055
Lsi10g01112 239 Pfam Plastocyanin-like domain 44 146 IPR003245 GO:0009055
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01906 Lsi-Chr9:27913524 Lsi10g01112 Lsi-Chr10:15387657 2.09E-36 dispersed
Lsi10g01112 Lsi-Chr10:15387657 Lsi02g02712 Lsi-Chr2:33455460 1.40E-07 dispersed
Lsi10g01112 Lsi-Chr10:15387657 Lsi08g00986 Lsi-Chr8:18327551 1.78E-12 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01112 - - cpep:111776932 437.187