Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi10g01112 | ATGGAACAAAGAAAGTACAGAGCCGATCTTCTTTCATCCGTCTTCCTTGTCCTCCTCCTTTTCCTTTCCCTTTCCGGCCGATCCGCCGTTCACGCCTACAAGAACTACACCGTCGGAGATTCCCTCGGCTGGTTCGACAAATTGGAGAAACCTGCCGTCGATTACCAAGAATGGACCGCCGGCAAAACCTTCGGCCTCGGCGATTTTCTAATTTTTAACACGGACAACAATCACTCGGTTGTGCAAACATTCAATTTCACCACATACAAGCTTTGTGACTACGACGACGCATCGGAAAACGACACGACGGAATGGTCCGCCGCCGACCCATCGGCGACCAATCCCTACGCCGTGACGGTGGCCGTCCCCCTGGTGAAAGAAGGGACCAACTATTTCTTCTCCGGCAACTACGATGGAGAGCAGTGCCAAAATGGGCAACAATTCAAAATAAACGTCACTCACGGACAGGGCCTCCCGAAGAGCATGAGAGATTCTTCCGACGAAGCTCCGGCACCGGTAGCTCCCGACACCGGCGACCAAACCGAATCTGCACCCGACACTATTGTCCCTTCCAGCTTTGACAATCCTCGAAACGACGTCGCTGATAACGACAAGGAAGCTTCGGGCTCCGTTTCGTTATCGCTTTGCTTCAAGTTTAATGAGCTTTTCTTCCTCTTAATTGGTATTGCCTCTGCCTGTCTTTTTCTTTGTACTGAGTGA | 720 | 51.39 | MEQRKYRADLLSSVFLVLLLFLSLSGRSAVHAYKNYTVGDSLGWFDKLEKPAVDYQEWTAGKTFGLGDFLIFNTDNNHSVVQTFNFTTYKLCDYDDASENDTTEWSAADPSATNPYAVTVAVPLVKEGTNYFFSGNYDGEQCQNGQQFKINVTHGQGLPKSMRDSSDEAPAPVAPDTGDQTESAPDTIVPSSFDNPRNDVADNDKEASGSVSLSLCFKFNELFFLLIGIASACLFLCTE | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 15387657 | 15391550 | - | Lsi10G011120.1 | Lsi10g01112 | 672669 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi10g01112 | 239 | PANTHER | BNAA08G26900D PROTEIN | 10 | 177 | - | - | |
| Lsi10g01112 | 239 | MobiDBLite | consensus disorder prediction | 180 | 197 | - | - | |
| Lsi10g01112 | 239 | CDD | Phytocyanin | 34 | 152 | - | - | |
| Lsi10g01112 | 239 | ProSiteProfiles | Phytocyanin domain profile. | 34 | 154 | IPR003245 | GO:0009055 | |
| Lsi10g01112 | 239 | Gene3D | - | 33 | 157 | IPR008972 | - | |
| Lsi10g01112 | 239 | MobiDBLite | consensus disorder prediction | 156 | 204 | - | - | |
| Lsi10g01112 | 239 | SUPERFAMILY | Cupredoxins | 34 | 152 | IPR008972 | - | |
| Lsi10g01112 | 239 | PANTHER | BLUE COPPER PROTEIN | 10 | 177 | IPR039391 | GO:0009055 | |
| Lsi10g01112 | 239 | Pfam | Plastocyanin-like domain | 44 | 146 | IPR003245 | GO:0009055 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi09g01906 | Lsi-Chr9:27913524 | Lsi10g01112 | Lsi-Chr10:15387657 | 2.09E-36 | dispersed | |
| Lsi10g01112 | Lsi-Chr10:15387657 | Lsi02g02712 | Lsi-Chr2:33455460 | 1.40E-07 | dispersed | |
| Lsi10g01112 | Lsi-Chr10:15387657 | Lsi08g00986 | Lsi-Chr8:18327551 | 1.78E-12 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi10g01112 | - | - | cpep:111776932 | 437.187 |