Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01118 ATGATAAACGCAGAGAAAAAAAACAGAACAACTCAGAGCAAACCAAAAGGAAAACGAACGGGAAAGAGAGAAGAAAGAAGAAGAGTGTATGTGATTGACGAAGTGGCGACAAGAAACACTGAAGGAGAGACGCTCAACAGTCGTCTCCAACTTTTTATCTTCTCTCTGTTTCCAAGTCTTGAAGGAGTTTTCGGCAGTAAGGAAGAATTAATGGCGGCTCGGGCTGTTGTTCCTCAGCGACAACTTCGAATCAGAGGTGTGTTTCTTCTCCTAAAATCTACGCCTTTTCTCTTCAACTTCGATTCATCTTCTGAAATTGCAACATTTCTTGATTCCAGTAAGCCGAAGGTGGTAGCGGCTGAAGGAAGAACAAGACGAATTCTCAAAGATATAGGCAATTTAGTACCTGATCGAGCCGCGGAAGGGAAACCCGTACCTCAACCAGCAGAGAAGGCTAAGAGAGCAATCACCCAAAAGGTGGATGGAGGAGTTGGGAAGGGAGTCAATGTAACGAAGGCTGCAGTAATTGAGAAACCGAAACCGAAGACTGTACTCCTCTCCGCCGACGAGAGACATATAATCAACATCAAAGATACTGAATCAAAGGACAAGAATAAGAGGTCTCTGAGTTCCACCCTTAGTGCCAGAAGCAAGGCTGCTTGTGGACTCACCAATAAACCACTGGATTCTTCAGTAGCTAATATTGATGAAGCAGATGCCAACAATGAATTGGCCGTAGTAGAATACATCGATGACATGTATAAGTTTTACAAGCTTGCAGAAGATGAGAGCAAAGTATCAGATTACATGGGAGCACAGCCAGATTTGAATGCTAAGATGAGATCCATTCTTATAGATTGGTTGATAGAAGTTCATCGCAAGTTTGAACTGATGCCGGAAACTCTTTACCTCGCTGTAAACATCGTCGACCGATTCCTTTCCTTAAAGACTGTACCAAGGAAGGAACTCCAATTGGTAGGTATCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCCCCAGAGAATGTGAAAATAGCCATGGCTCTACTGGATTTGTTCTACCTAATCGTTGGAGTTTGGGAAATGCAGGTCAATGACTTTGTAAGTATATCTGCAAATACTTATCAAAGAGAACAAATTTTGGTGATGGAGAAAGTAATATTGGGTAGGCTGGAATGGCTTCTAACAGTTCCTACACCATATGTTTTTCTTGTTCGATATGTCAAGGCTTCTGAGCCATCTGATGATGAGATGGAGAATATGGTATTTTTTCTGGCTGAGCTTGGTTTGATGAACTATCACATGGCAATATCATACAGCCCTTCAATCATTGCTTCCGCGGCTGTTTATGCTGCACGATGCACACTTGAAAAGAGCCCTATCTGGACAGCAACTTTGCATCACCATACAGGCTATGTTGAAGAAGAGTTGAAGGAATGTGCAGAAATCCTTGTGAACTTGCTGCACCGTGGAGCTCTAGATTCCAAACTCAAGGCTGTATATAGAAAATATACGAGTCCCGATCGGCGTGCGGTTTCTCTTCTTCCTCCAGCTAAGAGTTTAACTCCAGATTGCAGTCCAGAAGTATGA 1599 42.84 MINAEKKNRTTQSKPKGKRTGKREERRRVYVIDEVATRNTEGETLNSRLQLFIFSLFPSLEGVFGSKEELMAARAVVPQRQLRIRGVFLLLKSTPFLFNFDSSSEIATFLDSSKPKVVAAEGRTRRILKDIGNLVPDRAAEGKPVPQPAEKAKRAITQKVDGGVGKGVNVTKAAVIEKPKPKTVLLSADERHIINIKDTESKDKNKRSLSSTLSARSKAACGLTNKPLDSSVANIDEADANNELAVVEYIDDMYKFYKLAEDESKVSDYMGAQPDLNAKMRSILIDWLIEVHRKFELMPETLYLAVNIVDRFLSLKTVPRKELQLVGISSMLIACKYEEIWAPENVKIAMALLDLFYLIVGVWEMQVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYVKASEPSDDEMENMVFFLAELGLMNYHMAISYSPSIIASAAVYAARCTLEKSPIWTATLHHHTGYVEEELKECAEILVNLLHRGALDSKLKAVYRKYTSPDRRAVSLLPPAKSLTPDCSPEV 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15432307 15434668 - Lsi10G011180.1 Lsi10g01118 672675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01118 532 SUPERFAMILY Cyclin-like 402 524 IPR036915 -
Lsi10g01118 532 MobiDBLite consensus disorder prediction 1 25 - -
Lsi10g01118 532 CDD CYCLIN 280 391 IPR013763 -
Lsi10g01118 532 Gene3D - 266 392 - -
Lsi10g01118 532 CDD CYCLIN 399 488 IPR013763 -
Lsi10g01118 532 SMART Cyclin_C_2 401 521 IPR004367 -
Lsi10g01118 532 PANTHER CYCLINS 117 347 IPR039361 -
Lsi10g01118 532 PANTHER CYCLINS 362 523 IPR039361 -
Lsi10g01118 532 Pfam Cyclin, C-terminal domain 401 520 IPR004367 -
Lsi10g01118 532 Gene3D - 393 527 - -
Lsi10g01118 532 PANTHER CYCLIN-B1-4 117 347 - -
Lsi10g01118 532 PANTHER CYCLIN-B1-4 362 523 - -
Lsi10g01118 532 Pfam Cyclin, N-terminal domain 252 398 IPR006671 -
Lsi10g01118 532 SUPERFAMILY Cyclin-like 241 396 IPR036915 -
Lsi10g01118 532 SMART cyclin_7 405 489 IPR013763 -
Lsi10g01118 532 SMART cyclin_7 286 392 IPR013763 -
Lsi10g01118 532 ProSitePatterns Cyclins signature. 281 312 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01804 Lsi-Chr4:25250289 Lsi10g01118 Lsi-Chr10:15432307 1.07E-62 dispersed
Lsi08g01505 Lsi-Chr8:23165205 Lsi10g01118 Lsi-Chr10:15432307 4.16E-39 dispersed
Lsi10g01118 Lsi-Chr10:15432307 Lsi11g01591 Lsi-Chr11:24296969 2.81E-61 dispersed
Lsi10g01118 Lsi-Chr10:15432307 Lsi01g00535 Lsi-Chr1:4369805 1.07E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01118 K21777 - csv:101222873 689.493