Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01127 ATGACGTGGCATAATACTTTTGTACCACACCCGGCCTTCACCCGCCAGAATCCTCGAGCCATTGCAATCTCCTTCACACGGAGGCCGCCGGCGATCTTCGACCAAGACGAACTGAAAGAGCTCAGTCGAACGGTGAACTTGACAGTGGAGTGGCGTTTCTTGCCTTTTGCACTCCGCCTTCCACTCTACAATGGTGAGTTAGGGTTTTCGGCGGATATTAGAAAATGGTTCATGAAAGCACACGATAAAGAGAACGGCAGTGGGTCAAAGAAAGCAAAACCTGCTCCAAGCAACTTAGACCAATCTGCTTCAGCTGAACTACAGTCCGGAAAAACAACTGGTCATGAAAAATTTCTACTTCATTGGCATGGCTTTTGTGGGCCGAGTGGTGGGGAAAGTACTGGCAGACGGATAACTAGCAAATATTTTGCATCAGAAAAGCAGAAGTCCAAGGATACAAAAGAAACAGAGGAAACCCCGATCAAACGAAAGTCTCCACAGGATACAAAGGAATCTCCAGCCAAAAGAAAGTTTCAAAAGGATAATGAGGAATCATTGAAAGCTTCACCTTTAAAAAAATCAAACAAAATTGATAACAGTGACGATGATGCTGTTTTTTCTAGTTCTGGAAAGAACATATCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTGTAGAAATTGAAGTGAGTGATGATGAGGAAACTAAGGGCACCGATTCTTCTCTGAAGCCTAGTGGAAGGGGTAGGGGAGGAAGAGGTTCATCTGCTGCAACCGTTGGTGGTAGAGGCAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTTGGACTGCTTAGCCGGTTTAACTTTTGTAATTAGTGGAACACTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGTCGAGTAACTGGATCTAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTATTTGACATGATCCGTTCGTCAGGCAAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAGTCCTCGGTGGAATCTCCGACAGGGAAAAAATTCCAGAAAGTACAAGAAAAGCCCCGCAAAGATTTGACTGCTGGTGCTTCACCTGCCAAGCAAAAATGCCGAACGGCTGAATTCTCTAACCTAATATGGACAGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACAAGAACTTCCTAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGCTCAATGATTCTAGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAATGCCAGCGACAATCGGGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTGCATTTCAGAATGGATCAGCCAAAGCATCCGAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCGAGCATTAAAATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTATTGTCTTATTCTCAGCTATAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAATATGATGATATTCGCCAACGGCTTCTGAGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGATGAACGGATTGACCTCAGCATGAGTGATCTTGATTTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGGCCAAGCGCTGTTAGTAAGGATGACAATGGAATCAAACGGATGGATTTGATTGCCCGTACAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTGTAATCCCAGCGTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGTGATGAAATTCTGTACATGCAAGTTTATCAGTATGAGCGAACCATCAAGCCATCTTAATGGAGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGCGAATCCTGTTCAGGGAGGGTCAGGCGGGTTATCCTAGAACACCTACGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCACTGCACATGCTGCCTAAGGTTAGAATATATTTTGCTCGTCTGATTTTAGTTATAGGAATGGATGAAGCTGTTAAAATGGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGTATTGACATCTACATTTTGTTTAGGTCGTAAGAATCCATTGGATGGTGTAGCCCCTGCAGTCAAAGCTGCTCTGACAAAGGCATACAAAGAAGCGAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACACTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCGACTGAGGATACAGTTGAAGGTGCTGGTGGAGACACATTGGCAGAAAGAATGCAAGTGCAATTGGATTTGAAGGGGGTGGAAAATTCAAGCGCCAAGAAATCCGGTGGCAGGGGACGAGGAGGTAGAAGTTCCCAGGCTTCAGAGAAAAAAGGTGGTCGAGGTTCAGGATCCGCCACAAAGAGGAAAAGATGA 3207 42.78 MTWHNTFVPHPAFTRQNPRAIAISFTRRPPAIFDQDELKELSRTVNLTVEWRFLPFALRLPLYNGELGFSADIRKWFMKAHDKENGSGSKKAKPAPSNLDQSASAELQSGKTTGHEKFLLHWHGFCGPSGGESTGRRITSKYFASEKQKSKDTKETEETPIKRKSPQDTKESPAKRKFQKDNEESLKASPLKKSNKIDNSDDDAVFSSSGKNISEVTPNKKLKSGSGKGITQKPVEIEVSDDEETKGTDSSLKPSGRGRGGRGSSAATVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGALDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRSSGKKAPPRQDPKKSVVKSSVESPTGKKFQKVQEKPRKDLTAGASPAKQKCRTAEFSNLIWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNKNFLDVGSKKKVKKLNDSSAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFRMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSYRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLSSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDNGIKRMDLIARTAESIADGDIINVQIRRHRQWQLSQSSCIASCVIPASLLHGQRETLEQVMKFCTCKFISMSEPSSHLNGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGRVRRVILEHLRVENLTLFLKRLTEPLHMLPKVRIYFARLILVIGMDEAVKMVVEFMSLYSISQEDFDTVLELSKFQVLTSTFCLGRKNPLDGVAPAVKAALTKAYKEASKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDTVEGAGGDTLAERMQVQLDLKGVENSSAKKSGGRGRGGRSSQASEKKGGRGSGSATKRKR 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15509515 15527559 - Lsi10G011270.1 Lsi10g01127 672684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01127 1068 Gene3D - 622 692 - -
Lsi10g01127 1068 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 131 1050 - -
Lsi10g01127 1068 SUPERFAMILY post-AAA+ oligomerization domain-like 693 858 IPR008921 GO:0003677|GO:0006260
Lsi10g01127 1068 MobiDBLite consensus disorder prediction 201 226 - -
Lsi10g01127 1068 MobiDBLite consensus disorder prediction 374 421 - -
Lsi10g01127 1068 Gene3D BRCT domain 278 375 IPR036420 -
Lsi10g01127 1068 MobiDBLite consensus disorder prediction 285 300 - -
Lsi10g01127 1068 PIRSF RFC1 69 1068 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Lsi10g01127 1068 ProSiteProfiles BRCT domain profile. 301 375 IPR001357 -
Lsi10g01127 1068 MobiDBLite consensus disorder prediction 91 108 - -
Lsi10g01127 1068 SMART AAA_5 485 623 IPR003593 -
Lsi10g01127 1068 MobiDBLite consensus disorder prediction 235 250 - -
Lsi10g01127 1068 MobiDBLite consensus disorder prediction 83 108 - -
Lsi10g01127 1068 SUPERFAMILY BRCT domain 301 375 IPR036420 -
Lsi10g01127 1068 Gene3D - 694 806 - -
Lsi10g01127 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 682 IPR027417 -
Lsi10g01127 1068 MobiDBLite consensus disorder prediction 1027 1068 - -
Lsi10g01127 1068 CDD HLD_clamp_RFC 622 680 - -
Lsi10g01127 1068 MobiDBLite consensus disorder prediction 141 301 - -
Lsi10g01127 1068 Gene3D - 433 621 IPR027417 -
Lsi10g01127 1068 Pfam ATPase family associated with various cellular activities (AAA) 489 601 IPR003959 GO:0005524|GO:0016887
Lsi10g01127 1068 MobiDBLite consensus disorder prediction 142 200 - -
Lsi10g01127 1068 CDD BRCT_RFC1 301 374 - -
Lsi10g01127 1068 CDD AAA 474 615 - -
Lsi10g01127 1068 PANTHER REPLICATION FACTOR C SUBUNIT 1 131 1050 - -
Lsi10g01127 1068 Pfam Replication factor RFC1 C terminal domain 762 972 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Lsi10g01127 1068 Pfam BRCA1 C Terminus (BRCT) domain 304 373 IPR001357 -
Lsi10g01127 1068 SMART BRCT_7 303 376 IPR001357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00582 Lsi-Chr1:4641723 Lsi10g01127 Lsi-Chr10:15509515 8.36E-06 dispersed
Lsi04g02385 Lsi-Chr4:30997873 Lsi10g01127 Lsi-Chr10:15509515 1.58E-10 dispersed
Lsi05g01823 Lsi-Chr5:25505730 Lsi10g01127 Lsi-Chr10:15509515 1.96E-17 dispersed
Lsi08g00447 Lsi-Chr8:12109074 Lsi10g01127 Lsi-Chr10:15509515 1.39E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01127 K10754 - csv:101204361 1565.44