Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01127 | ATGACGTGGCATAATACTTTTGTACCACACCCGGCCTTCACCCGCCAGAATCCTCGAGCCATTGCAATCTCCTTCACACGGAGGCCGCCGGCGATCTTCGACCAAGACGAACTGAAAGAGCTCAGTCGAACGGTGAACTTGACAGTGGAGTGGCGTTTCTTGCCTTTTGCACTCCGCCTTCCACTCTACAATGGTGAGTTAGGGTTTTCGGCGGATATTAGAAAATGGTTCATGAAAGCACACGATAAAGAGAACGGCAGTGGGTCAAAGAAAGCAAAACCTGCTCCAAGCAACTTAGACCAATCTGCTTCAGCTGAACTACAGTCCGGAAAAACAACTGGTCATGAAAAATTTCTACTTCATTGGCATGGCTTTTGTGGGCCGAGTGGTGGGGAAAGTACTGGCAGACGGATAACTAGCAAATATTTTGCATCAGAAAAGCAGAAGTCCAAGGATACAAAAGAAACAGAGGAAACCCCGATCAAACGAAAGTCTCCACAGGATACAAAGGAATCTCCAGCCAAAAGAAAGTTTCAAAAGGATAATGAGGAATCATTGAAAGCTTCACCTTTAAAAAAATCAAACAAAATTGATAACAGTGACGATGATGCTGTTTTTTCTAGTTCTGGAAAGAACATATCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTGTAGAAATTGAAGTGAGTGATGATGAGGAAACTAAGGGCACCGATTCTTCTCTGAAGCCTAGTGGAAGGGGTAGGGGAGGAAGAGGTTCATCTGCTGCAACCGTTGGTGGTAGAGGCAGAGGTGGTGGGCGGGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTTGGACTGCTTAGCCGGTTTAACTTTTGTAATTAGTGGAACACTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGTCGAGTAACTGGATCTAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTATTTGACATGATCCGTTCGTCAGGCAAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAGTCCTCGGTGGAATCTCCGACAGGGAAAAAATTCCAGAAAGTACAAGAAAAGCCCCGCAAAGATTTGACTGCTGGTGCTTCACCTGCCAAGCAAAAATGCCGAACGGCTGAATTCTCTAACCTAATATGGACAGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACAAGAACTTCCTAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGCTCAATGATTCTAGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCGGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAATGCCAGCGACAATCGGGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTGCATTTCAGAATGGATCAGCCAAAGCATCCGAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCGAGCATTAAAATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTATTGTCTTATTCTCAGCTATAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAATATGATGATATTCGCCAACGGCTTCTGAGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTTAATTCTGGGAAGTTAAGGATGGATGAACGGATTGACCTCAGCATGAGTGATCTTGATTTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTATAGGCCAAGCGCTGTTAGTAAGGATGACAATGGAATCAAACGGATGGATTTGATTGCCCGTACAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTGTAATCCCAGCGTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGTGATGAAATTCTGTACATGCAAGTTTATCAGTATGAGCGAACCATCAAGCCATCTTAATGGAGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGCGAATCCTGTTCAGGGAGGGTCAGGCGGGTTATCCTAGAACACCTACGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCACTGCACATGCTGCCTAAGGTTAGAATATATTTTGCTCGTCTGATTTTAGTTATAGGAATGGATGAAGCTGTTAAAATGGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGTATTGACATCTACATTTTGTTTAGGTCGTAAGAATCCATTGGATGGTGTAGCCCCTGCAGTCAAAGCTGCTCTGACAAAGGCATACAAAGAAGCGAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACACTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCGACTGAGGATACAGTTGAAGGTGCTGGTGGAGACACATTGGCAGAAAGAATGCAAGTGCAATTGGATTTGAAGGGGGTGGAAAATTCAAGCGCCAAGAAATCCGGTGGCAGGGGACGAGGAGGTAGAAGTTCCCAGGCTTCAGAGAAAAAAGGTGGTCGAGGTTCAGGATCCGCCACAAAGAGGAAAAGATGA | 3207 | 42.78 | MTWHNTFVPHPAFTRQNPRAIAISFTRRPPAIFDQDELKELSRTVNLTVEWRFLPFALRLPLYNGELGFSADIRKWFMKAHDKENGSGSKKAKPAPSNLDQSASAELQSGKTTGHEKFLLHWHGFCGPSGGESTGRRITSKYFASEKQKSKDTKETEETPIKRKSPQDTKESPAKRKFQKDNEESLKASPLKKSNKIDNSDDDAVFSSSGKNISEVTPNKKLKSGSGKGITQKPVEIEVSDDEETKGTDSSLKPSGRGRGGRGSSAATVGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGALDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRSSGKKAPPRQDPKKSVVKSSVESPTGKKFQKVQEKPRKDLTAGASPAKQKCRTAEFSNLIWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNKNFLDVGSKKKVKKLNDSSAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFRMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSYRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLSSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDNGIKRMDLIARTAESIADGDIINVQIRRHRQWQLSQSSCIASCVIPASLLHGQRETLEQVMKFCTCKFISMSEPSSHLNGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGRVRRVILEHLRVENLTLFLKRLTEPLHMLPKVRIYFARLILVIGMDEAVKMVVEFMSLYSISQEDFDTVLELSKFQVLTSTFCLGRKNPLDGVAPAVKAALTKAYKEASKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDTVEGAGGDTLAERMQVQLDLKGVENSSAKKSGGRGRGGRSSQASEKKGGRGSGSATKRKR | 1068 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 15509515 | 15527559 | - | Lsi10G011270.1 | Lsi10g01127 | 672684 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01127 | 1068 | Gene3D | - | 622 | 692 | - | - | |
Lsi10g01127 | 1068 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 131 | 1050 | - | - | |
Lsi10g01127 | 1068 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 693 | 858 | IPR008921 | GO:0003677|GO:0006260 | |
Lsi10g01127 | 1068 | MobiDBLite | consensus disorder prediction | 201 | 226 | - | - | |
Lsi10g01127 | 1068 | MobiDBLite | consensus disorder prediction | 374 | 421 | - | - | |
Lsi10g01127 | 1068 | Gene3D | BRCT domain | 278 | 375 | IPR036420 | - | |
Lsi10g01127 | 1068 | MobiDBLite | consensus disorder prediction | 285 | 300 | - | - | |
Lsi10g01127 | 1068 | PIRSF | RFC1 | 69 | 1068 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
Lsi10g01127 | 1068 | ProSiteProfiles | BRCT domain profile. | 301 | 375 | IPR001357 | - | |
Lsi10g01127 | 1068 | MobiDBLite | consensus disorder prediction | 91 | 108 | - | - | |
Lsi10g01127 | 1068 | SMART | AAA_5 | 485 | 623 | IPR003593 | - | |
Lsi10g01127 | 1068 | MobiDBLite | consensus disorder prediction | 235 | 250 | - | - | |
Lsi10g01127 | 1068 | MobiDBLite | consensus disorder prediction | 83 | 108 | - | - | |
Lsi10g01127 | 1068 | SUPERFAMILY | BRCT domain | 301 | 375 | IPR036420 | - | |
Lsi10g01127 | 1068 | Gene3D | - | 694 | 806 | - | - | |
Lsi10g01127 | 1068 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 433 | 682 | IPR027417 | - | |
Lsi10g01127 | 1068 | MobiDBLite | consensus disorder prediction | 1027 | 1068 | - | - | |
Lsi10g01127 | 1068 | CDD | HLD_clamp_RFC | 622 | 680 | - | - | |
Lsi10g01127 | 1068 | MobiDBLite | consensus disorder prediction | 141 | 301 | - | - | |
Lsi10g01127 | 1068 | Gene3D | - | 433 | 621 | IPR027417 | - | |
Lsi10g01127 | 1068 | Pfam | ATPase family associated with various cellular activities (AAA) | 489 | 601 | IPR003959 | GO:0005524|GO:0016887 | |
Lsi10g01127 | 1068 | MobiDBLite | consensus disorder prediction | 142 | 200 | - | - | |
Lsi10g01127 | 1068 | CDD | BRCT_RFC1 | 301 | 374 | - | - | |
Lsi10g01127 | 1068 | CDD | AAA | 474 | 615 | - | - | |
Lsi10g01127 | 1068 | PANTHER | REPLICATION FACTOR C SUBUNIT 1 | 131 | 1050 | - | - | |
Lsi10g01127 | 1068 | Pfam | Replication factor RFC1 C terminal domain | 762 | 972 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
Lsi10g01127 | 1068 | Pfam | BRCA1 C Terminus (BRCT) domain | 304 | 373 | IPR001357 | - | |
Lsi10g01127 | 1068 | SMART | BRCT_7 | 303 | 376 | IPR001357 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00582 | Lsi-Chr1:4641723 | Lsi10g01127 | Lsi-Chr10:15509515 | 8.36E-06 | dispersed | |
Lsi04g02385 | Lsi-Chr4:30997873 | Lsi10g01127 | Lsi-Chr10:15509515 | 1.58E-10 | dispersed | |
Lsi05g01823 | Lsi-Chr5:25505730 | Lsi10g01127 | Lsi-Chr10:15509515 | 1.96E-17 | dispersed | |
Lsi08g00447 | Lsi-Chr8:12109074 | Lsi10g01127 | Lsi-Chr10:15509515 | 1.39E-12 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01127 | K10754 | - | csv:101204361 | 1565.44 |