Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01128 ATGATAGTAAGTGTTCCATGCAACAGCATGTTCACACTAGTGACTGTGAGATGTGGTCATTGTTCAAATCTGCTGTCTGGTCATAAACAGCAGCAGGTGAATGCTGGAGATTCAAACAAAGACAGAGCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCGTGAAATGGGTTTTGGAATGTTGGCAGCACCAGAGAAAAGACAGCGTGTTCCTTCAGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAACAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATCCACTTTGGGCTGAAGCTGGATGGAAATAAACAAACAAAAGAAGTTTGA 435 41.61 MIVSVPCNSMFTLVTVRCGHCSNLLSGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRREMGFGMLAAPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTKEV 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15542074 15547713 + Lsi10G011280.1 Lsi10g01128 672685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01128 144 MobiDBLite consensus disorder prediction 30 78 - -
Lsi10g01128 144 Gene3D High mobility group box domain 80 128 IPR036910 -
Lsi10g01128 144 Pfam YABBY protein 1 133 IPR006780 GO:0007275
Lsi10g01128 144 PANTHER AXIAL REGULATOR YABBY 2-RELATED 2 143 - -
Lsi10g01128 144 SUPERFAMILY HMG-box 78 126 IPR036910 -
Lsi10g01128 144 PANTHER PROTEIN YABBY 6-RELATED 2 143 IPR006780 GO:0007275
Lsi10g01128 144 MobiDBLite consensus disorder prediction 30 55 - -
Lsi10g01128 144 MobiDBLite consensus disorder prediction 56 70 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01128 Lsi-Chr10:15542074 Lsi11g00326 Lsi-Chr11:3356594 2.76E-34 dispersed
Lsi10g01128 Lsi-Chr10:15542074 Lsi09g00397 Lsi-Chr9:4170250 2.56E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26064 PF04690 YABBY 3.30E-48 CL0114 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01128 K25796 - csv:101222154 233.417