Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01128 ATGATAGTAAGTGTTCCATGCAACAGCATGTTCACACTAGTGACTGTGAGATGTGGTCATTGTTCAAATCTGCTGTCTGGTCATAAACAGCAGCAGGTGAATGCTGGAGATTCAAACAAAGACAGAGCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCGTGAAATGGGTTTTGGAATGTTGGCAGCACCAGAGAAAAGACAGCGTGTTCCTTCAGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAACAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATCCACTTTGGGCTGAAGCTGGATGGAAATAAACAAACAAAAGAAGTTTGA 435 41.61 MIVSVPCNSMFTLVTVRCGHCSNLLSGHKQQQVNAGDSNKDRASSSSSSKCTKIGSLDSAERDQHRIPPIRREMGFGMLAAPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTKEV 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15542074 15547713 + Lsi10G011280.1 Lsi10g01128 672685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01128 144 MobiDBLite consensus disorder prediction 30 78 - -
Lsi10g01128 144 Gene3D High mobility group box domain 80 128 IPR036910 -
Lsi10g01128 144 Pfam YABBY protein 1 133 IPR006780 GO:0007275
Lsi10g01128 144 PANTHER AXIAL REGULATOR YABBY 2-RELATED 2 143 - -
Lsi10g01128 144 SUPERFAMILY HMG-box 78 126 IPR036910 -
Lsi10g01128 144 PANTHER PROTEIN YABBY 6-RELATED 2 143 IPR006780 GO:0007275
Lsi10g01128 144 MobiDBLite consensus disorder prediction 30 55 - -
Lsi10g01128 144 MobiDBLite consensus disorder prediction 56 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01128 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101222154 233.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01128 Lsi-Chr10:15542074 Lsi11g00326 Lsi-Chr11:3356594 2.76E-34 dispersed
Lsi10g01128 Lsi-Chr10:15542074 Lsi09g00397 Lsi-Chr9:4170250 2.56E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00397 CCT 84 244 C2C2-YABBY Transcription Factor Family AT2G45190 56.8 1.5e-39 159.5
Lsi09g00397 CCT 40 234 C2C2-YABBY Transcription Factor Family AT1G08465 50.5 1.8e-41 166.0
Lsi10g01128 . 1 144 C2C2-YABBY Transcription Factor Family AT1G08465 58.1 2.2e-39 159.1
Lsi09g00397 CCT 51 243 C2C2-YABBY Transcription Factor Family AT4G00180 55.6 1.7e-48 189.5
Lsi09g00397 CCT 42 206 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.2e-41 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26064 PF04690 YABBY 3.30E-48 CL0114 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g01128 Lsi_Chr10 FPKM 0.900729 1.551236 3.295551 2.872298 1.533249 1.393631 1.926253 11.188474 13.143845 13.648852