Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01136 | ATGAAAATGGAAGAAGATAATGGTGGAATTGAAGTCCCTTCCTATTTCCTTTGCCCAATTTCCCTTCAACTCATGAGAGATCCAGTCACAATCTCCACCGGCATCACTTACGATCGATCCAACATCGAAAAATGGCTCTTTTCTTGCAACAAAACAACTTGTCCTATCACCAAACAAGCCTTATCATCCGATCTTGATTTATTAACTCCAAATCATACTCTTCGCCGTTTGATTCAATCTTGGTGTACACTCAATGCTTCTCATGGAATTGAAAGGATTCCAACTCCAAAATCTCCAATTGACAAAACCCATATCGCCAAAATTCTCAAAGAATCTCAAAATTTCCCCAATTCCAACCATAAATGTCTTCTTGCACTTAAAGCTATCGTCTTGGAGAGTGAAAGAAATCGCAACCTCGTGGCCCAATCTGTTGAGGCTTTTGAGTTTCTAGCTTTGCTTATTAAAAGTGGTGGTAGTAACAATATTGGTTCTATTGAATTAGCGGTGGAAATTCTCTTTCACATCAAATCCTCCCAAACCCATCTCAAGAATCTTTTAAATAGCGATGTTAACTTCATTAACTCTCTTACTTTTGTCCTTCAACATGGGAATTGTCAATCTAGAGCCTATGCGGTAATGTTGCTTAAATCAAGCTTGGAACTTGCTGATCCAATTCGGTTGATGAGTATTGAGAGGGAACTTCTAAGTGAAATTGTGCGTGTGATTCATGATCACATATCTCATCAAGCTTCTAAATCCGCCTTGAAGATTCTCGCGGACGTGTGTCCGTGGGGGAGGAACCGTGTGAAGGCGGTCGAGGGTGGTGCGGTTCAAGTGTTGGTGGAGTTGCTTTTGAACTCACCCGAGAGACGGTGGTCGGAGCTAGGGTTGGTGGTTTTGGATCAACTTTGTGTGTGCGCAGAGGGACGGGAGAAGCTCGTGGAACACGCGGCAGGGGTTGCGATTGTGTCTAAGAAAATACTTCGGGTTTCGGCGATGGCGAGCGATCGAGCGGTGAGGATTTTGTCGTCAATTTGTCGGTTTTCGGCATCGGTGAAGGTGGTTCAAGAAATGTTGGAGGTTGGGGTGGTGGCAAAATTGTGTTTGGTTTTGCAAATGGATTGTAGTTTGAAGACAAGGGGAAAGGCAAGAGATATACTAAAGTTGCATTCTAGGGTTTGGAGTAACTCTTCATGTATTCCTCCACATTTATTGTCTGCTTATCCATCGTCTTGA | 1236 | 43.04 | MKMEEDNGGIEVPSYFLCPISLQLMRDPVTISTGITYDRSNIEKWLFSCNKTTCPITKQALSSDLDLLTPNHTLRRLIQSWCTLNASHGIERIPTPKSPIDKTHIAKILKESQNFPNSNHKCLLALKAIVLESERNRNLVAQSVEAFEFLALLIKSGGSNNIGSIELAVEILFHIKSSQTHLKNLLNSDVNFINSLTFVLQHGNCQSRAYAVMLLKSSLELADPIRLMSIERELLSEIVRVIHDHISHQASKSALKILADVCPWGRNRVKAVEGGAVQVLVELLLNSPERRWSELGLVVLDQLCVCAEGREKLVEHAAGVAIVSKKILRVSAMASDRAVRILSSICRFSASVKVVQEMLEVGVVAKLCLVLQMDCSLKTRGKARDILKLHSRVWSNSSCIPPHLLSAYPSS | 411 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 15647612 | 15648847 | + | Lsi10G011360.1 | Lsi10g01136 | 672693 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01136 | 411 | PANTHER | WDSAM1 PROTEIN | 11 | 409 | IPR045185 | GO:0061630 | |
Lsi10g01136 | 411 | Pfam | U-box domain | 12 | 83 | IPR003613 | GO:0004842|GO:0016567 | |
Lsi10g01136 | 411 | Gene3D | - | 103 | 391 | IPR011989 | - | |
Lsi10g01136 | 411 | PANTHER | OS11G0573500 PROTEIN | 11 | 409 | - | - | |
Lsi10g01136 | 411 | SUPERFAMILY | ARM repeat | 161 | 389 | IPR016024 | - | |
Lsi10g01136 | 411 | SMART | Ubox_2 | 15 | 81 | IPR003613 | GO:0004842|GO:0016567 | |
Lsi10g01136 | 411 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 92 | IPR013083 | - | |
Lsi10g01136 | 411 | SUPERFAMILY | RING/U-box | 8 | 88 | - | - | |
Lsi10g01136 | 411 | CDD | RING-Ubox_PUB | 16 | 59 | IPR045210 | - | |
Lsi10g01136 | 411 | ProSiteProfiles | U-box domain profile. | 11 | 88 | IPR003613 | GO:0004842|GO:0016567 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01651 | Lsi-Chr1:15058215 | Lsi10g01136 | Lsi-Chr10:15647612 | 8.43E-50 | dispersed | |
Lsi05g00339 | Lsi-Chr5:4302023 | Lsi10g01136 | Lsi-Chr10:15647612 | 1.75E-48 | dispersed | |
Lsi05g01915 | Lsi-Chr5:26365770 | Lsi10g01136 | Lsi-Chr10:15647612 | 5.64E-64 | dispersed | |
Lsi06g00616 | Lsi-Chr6:8639774 | Lsi10g01136 | Lsi-Chr10:15647612 | 1.46E-103 | dispersed | |
Lsi06g00620 | Lsi-Chr6:8806717 | Lsi10g01136 | Lsi-Chr10:15647612 | 2.33E-87 | dispersed | |
Lsi09g01873 | Lsi-Chr9:27536826 | Lsi10g01136 | Lsi-Chr10:15647612 | 4.74E-57 | dispersed | |
Lsi10g00713 | Lsi-Chr10:9983755 | Lsi10g01136 | Lsi-Chr10:15647612 | 8.07E-35 | dispersed | |
Lsi10g00743 | Lsi-Chr10:10260504 | Lsi10g01136 | Lsi-Chr10:15647612 | 4.01E-34 | dispersed | |
Lsi10g01136 | Lsi-Chr10:15647612 | Lsi03g01816 | Lsi-Chr3:29647859 | 1.91E-137 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01136 | - | - | csv:101203877 | 722.235 |