Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01136 ATGAAAATGGAAGAAGATAATGGTGGAATTGAAGTCCCTTCCTATTTCCTTTGCCCAATTTCCCTTCAACTCATGAGAGATCCAGTCACAATCTCCACCGGCATCACTTACGATCGATCCAACATCGAAAAATGGCTCTTTTCTTGCAACAAAACAACTTGTCCTATCACCAAACAAGCCTTATCATCCGATCTTGATTTATTAACTCCAAATCATACTCTTCGCCGTTTGATTCAATCTTGGTGTACACTCAATGCTTCTCATGGAATTGAAAGGATTCCAACTCCAAAATCTCCAATTGACAAAACCCATATCGCCAAAATTCTCAAAGAATCTCAAAATTTCCCCAATTCCAACCATAAATGTCTTCTTGCACTTAAAGCTATCGTCTTGGAGAGTGAAAGAAATCGCAACCTCGTGGCCCAATCTGTTGAGGCTTTTGAGTTTCTAGCTTTGCTTATTAAAAGTGGTGGTAGTAACAATATTGGTTCTATTGAATTAGCGGTGGAAATTCTCTTTCACATCAAATCCTCCCAAACCCATCTCAAGAATCTTTTAAATAGCGATGTTAACTTCATTAACTCTCTTACTTTTGTCCTTCAACATGGGAATTGTCAATCTAGAGCCTATGCGGTAATGTTGCTTAAATCAAGCTTGGAACTTGCTGATCCAATTCGGTTGATGAGTATTGAGAGGGAACTTCTAAGTGAAATTGTGCGTGTGATTCATGATCACATATCTCATCAAGCTTCTAAATCCGCCTTGAAGATTCTCGCGGACGTGTGTCCGTGGGGGAGGAACCGTGTGAAGGCGGTCGAGGGTGGTGCGGTTCAAGTGTTGGTGGAGTTGCTTTTGAACTCACCCGAGAGACGGTGGTCGGAGCTAGGGTTGGTGGTTTTGGATCAACTTTGTGTGTGCGCAGAGGGACGGGAGAAGCTCGTGGAACACGCGGCAGGGGTTGCGATTGTGTCTAAGAAAATACTTCGGGTTTCGGCGATGGCGAGCGATCGAGCGGTGAGGATTTTGTCGTCAATTTGTCGGTTTTCGGCATCGGTGAAGGTGGTTCAAGAAATGTTGGAGGTTGGGGTGGTGGCAAAATTGTGTTTGGTTTTGCAAATGGATTGTAGTTTGAAGACAAGGGGAAAGGCAAGAGATATACTAAAGTTGCATTCTAGGGTTTGGAGTAACTCTTCATGTATTCCTCCACATTTATTGTCTGCTTATCCATCGTCTTGA 1236 43.04 MKMEEDNGGIEVPSYFLCPISLQLMRDPVTISTGITYDRSNIEKWLFSCNKTTCPITKQALSSDLDLLTPNHTLRRLIQSWCTLNASHGIERIPTPKSPIDKTHIAKILKESQNFPNSNHKCLLALKAIVLESERNRNLVAQSVEAFEFLALLIKSGGSNNIGSIELAVEILFHIKSSQTHLKNLLNSDVNFINSLTFVLQHGNCQSRAYAVMLLKSSLELADPIRLMSIERELLSEIVRVIHDHISHQASKSALKILADVCPWGRNRVKAVEGGAVQVLVELLLNSPERRWSELGLVVLDQLCVCAEGREKLVEHAAGVAIVSKKILRVSAMASDRAVRILSSICRFSASVKVVQEMLEVGVVAKLCLVLQMDCSLKTRGKARDILKLHSRVWSNSSCIPPHLLSAYPSS 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15647612 15648847 + Lsi10G011360.1 Lsi10g01136 672693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01136 411 PANTHER WDSAM1 PROTEIN 11 409 IPR045185 GO:0061630
Lsi10g01136 411 Pfam U-box domain 12 83 IPR003613 GO:0004842|GO:0016567
Lsi10g01136 411 Gene3D - 103 391 IPR011989 -
Lsi10g01136 411 PANTHER OS11G0573500 PROTEIN 11 409 - -
Lsi10g01136 411 SUPERFAMILY ARM repeat 161 389 IPR016024 -
Lsi10g01136 411 SMART Ubox_2 15 81 IPR003613 GO:0004842|GO:0016567
Lsi10g01136 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 92 IPR013083 -
Lsi10g01136 411 SUPERFAMILY RING/U-box 8 88 - -
Lsi10g01136 411 CDD RING-Ubox_PUB 16 59 IPR045210 -
Lsi10g01136 411 ProSiteProfiles U-box domain profile. 11 88 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01136 - - - csv:101203877 722.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01651 Lsi-Chr1:15058215 Lsi10g01136 Lsi-Chr10:15647612 8.43E-50 dispersed
Lsi05g00339 Lsi-Chr5:4302023 Lsi10g01136 Lsi-Chr10:15647612 1.75E-48 dispersed
Lsi05g01915 Lsi-Chr5:26365770 Lsi10g01136 Lsi-Chr10:15647612 5.64E-64 dispersed
Lsi06g00616 Lsi-Chr6:8639774 Lsi10g01136 Lsi-Chr10:15647612 1.46E-103 dispersed
Lsi06g00620 Lsi-Chr6:8806717 Lsi10g01136 Lsi-Chr10:15647612 2.33E-87 dispersed
Lsi09g01873 Lsi-Chr9:27536826 Lsi10g01136 Lsi-Chr10:15647612 4.74E-57 dispersed
Lsi10g00713 Lsi-Chr10:9983755 Lsi10g01136 Lsi-Chr10:15647612 8.07E-35 dispersed
Lsi10g00743 Lsi-Chr10:10260504 Lsi10g01136 Lsi-Chr10:15647612 4.01E-34 dispersed
Lsi10g01136 Lsi-Chr10:15647612 Lsi03g01816 Lsi-Chr3:29647859 1.91E-137 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007470 2 1 2 3 2 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 2 1 1 1 1 1 0 1 0 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g01136 Lsi_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0