Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01136 ATGAAAATGGAAGAAGATAATGGTGGAATTGAAGTCCCTTCCTATTTCCTTTGCCCAATTTCCCTTCAACTCATGAGAGATCCAGTCACAATCTCCACCGGCATCACTTACGATCGATCCAACATCGAAAAATGGCTCTTTTCTTGCAACAAAACAACTTGTCCTATCACCAAACAAGCCTTATCATCCGATCTTGATTTATTAACTCCAAATCATACTCTTCGCCGTTTGATTCAATCTTGGTGTACACTCAATGCTTCTCATGGAATTGAAAGGATTCCAACTCCAAAATCTCCAATTGACAAAACCCATATCGCCAAAATTCTCAAAGAATCTCAAAATTTCCCCAATTCCAACCATAAATGTCTTCTTGCACTTAAAGCTATCGTCTTGGAGAGTGAAAGAAATCGCAACCTCGTGGCCCAATCTGTTGAGGCTTTTGAGTTTCTAGCTTTGCTTATTAAAAGTGGTGGTAGTAACAATATTGGTTCTATTGAATTAGCGGTGGAAATTCTCTTTCACATCAAATCCTCCCAAACCCATCTCAAGAATCTTTTAAATAGCGATGTTAACTTCATTAACTCTCTTACTTTTGTCCTTCAACATGGGAATTGTCAATCTAGAGCCTATGCGGTAATGTTGCTTAAATCAAGCTTGGAACTTGCTGATCCAATTCGGTTGATGAGTATTGAGAGGGAACTTCTAAGTGAAATTGTGCGTGTGATTCATGATCACATATCTCATCAAGCTTCTAAATCCGCCTTGAAGATTCTCGCGGACGTGTGTCCGTGGGGGAGGAACCGTGTGAAGGCGGTCGAGGGTGGTGCGGTTCAAGTGTTGGTGGAGTTGCTTTTGAACTCACCCGAGAGACGGTGGTCGGAGCTAGGGTTGGTGGTTTTGGATCAACTTTGTGTGTGCGCAGAGGGACGGGAGAAGCTCGTGGAACACGCGGCAGGGGTTGCGATTGTGTCTAAGAAAATACTTCGGGTTTCGGCGATGGCGAGCGATCGAGCGGTGAGGATTTTGTCGTCAATTTGTCGGTTTTCGGCATCGGTGAAGGTGGTTCAAGAAATGTTGGAGGTTGGGGTGGTGGCAAAATTGTGTTTGGTTTTGCAAATGGATTGTAGTTTGAAGACAAGGGGAAAGGCAAGAGATATACTAAAGTTGCATTCTAGGGTTTGGAGTAACTCTTCATGTATTCCTCCACATTTATTGTCTGCTTATCCATCGTCTTGA 1236 43.04 MKMEEDNGGIEVPSYFLCPISLQLMRDPVTISTGITYDRSNIEKWLFSCNKTTCPITKQALSSDLDLLTPNHTLRRLIQSWCTLNASHGIERIPTPKSPIDKTHIAKILKESQNFPNSNHKCLLALKAIVLESERNRNLVAQSVEAFEFLALLIKSGGSNNIGSIELAVEILFHIKSSQTHLKNLLNSDVNFINSLTFVLQHGNCQSRAYAVMLLKSSLELADPIRLMSIERELLSEIVRVIHDHISHQASKSALKILADVCPWGRNRVKAVEGGAVQVLVELLLNSPERRWSELGLVVLDQLCVCAEGREKLVEHAAGVAIVSKKILRVSAMASDRAVRILSSICRFSASVKVVQEMLEVGVVAKLCLVLQMDCSLKTRGKARDILKLHSRVWSNSSCIPPHLLSAYPSS 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15647612 15648847 + Lsi10G011360.1 Lsi10g01136 672693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01136 411 PANTHER WDSAM1 PROTEIN 11 409 IPR045185 GO:0061630
Lsi10g01136 411 Pfam U-box domain 12 83 IPR003613 GO:0004842|GO:0016567
Lsi10g01136 411 Gene3D - 103 391 IPR011989 -
Lsi10g01136 411 PANTHER OS11G0573500 PROTEIN 11 409 - -
Lsi10g01136 411 SUPERFAMILY ARM repeat 161 389 IPR016024 -
Lsi10g01136 411 SMART Ubox_2 15 81 IPR003613 GO:0004842|GO:0016567
Lsi10g01136 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 92 IPR013083 -
Lsi10g01136 411 SUPERFAMILY RING/U-box 8 88 - -
Lsi10g01136 411 CDD RING-Ubox_PUB 16 59 IPR045210 -
Lsi10g01136 411 ProSiteProfiles U-box domain profile. 11 88 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01651 Lsi-Chr1:15058215 Lsi10g01136 Lsi-Chr10:15647612 8.43E-50 dispersed
Lsi05g00339 Lsi-Chr5:4302023 Lsi10g01136 Lsi-Chr10:15647612 1.75E-48 dispersed
Lsi05g01915 Lsi-Chr5:26365770 Lsi10g01136 Lsi-Chr10:15647612 5.64E-64 dispersed
Lsi06g00616 Lsi-Chr6:8639774 Lsi10g01136 Lsi-Chr10:15647612 1.46E-103 dispersed
Lsi06g00620 Lsi-Chr6:8806717 Lsi10g01136 Lsi-Chr10:15647612 2.33E-87 dispersed
Lsi09g01873 Lsi-Chr9:27536826 Lsi10g01136 Lsi-Chr10:15647612 4.74E-57 dispersed
Lsi10g00713 Lsi-Chr10:9983755 Lsi10g01136 Lsi-Chr10:15647612 8.07E-35 dispersed
Lsi10g00743 Lsi-Chr10:10260504 Lsi10g01136 Lsi-Chr10:15647612 4.01E-34 dispersed
Lsi10g01136 Lsi-Chr10:15647612 Lsi03g01816 Lsi-Chr3:29647859 1.91E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01136 - - csv:101203877 722.235