Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01142 ATGTCGGGTTCTCGAGCTCCCAACTCCTCTGGACACCTGCCTGAGCAGATCATGCACTCTCTTAAGCGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCACCTGGGGACTATCACCGCTTCGCTCCGGACTCTCGACTCGCCGATCAAGAACCTGACGCTATCGTAGTCAAATCTCCACAATTGAAGAGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAACTGATAGAGCTGCCGGTCCTAGATTTACTGAGATTGTTAACAGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACCAAATGCAGTAGATCGGGGCCACAGACTCCCATGTCAAATGTTGGTAAGTTGTATATCATACATGCTAGTCCCCTTGGTTTGAAGTTAAAAATTCTATATATAAAATACCTTCTCCGATTCTTGTTTCTGAGTGAGGAAAGTGAAGCTCCTTTGCTAAAGAAATTGCGTTCACCTTCTACAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATTTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGTATGCAAAAATATGACATTGACTGCAGAAGTAGAGAACCTTACCATGGAGGAGCGTGGAATAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCCATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTACTCAGAAGCACCATGGGCCCCATAGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGTGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGATTGAACGAAGCACCTGCAACTACGATAGAAACAGAGGATACCAGGGGAAAGGAAATTGAAACACGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACAGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTATAGTATTGGCAATGTCAACTCACCCCAAACCCAGACTCCACTTCCGAATGATGCACCTGATTTGCCTTCTGCTAATCCTTCTAGCAGCTGA 1536 44.14 MSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDSRLADQEPDAIVVKSPQLKRKSEVADYEAESTDRAAGPRFTEIVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNVGKLYIIHASPLGLKLKILYIKYLLRFLFLSEESEAPLLKKLRSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQVCKNMTLTAEVENLTMEERGIDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAVEVPPSLPSSSGLNEAPATTIETEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIGNVNSPQTQTPLPNDAPDLPSANPSSS 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15738236 15746132 + Lsi10G011420.1 Lsi10g01142 672699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01142 511 PANTHER TRANSCRIPTION FACTOR E2FB 18 126 - -
Lsi10g01142 511 MobiDBLite consensus disorder prediction 386 402 - -
Lsi10g01142 511 SUPERFAMILY E2F-DP heterodimerization region 268 371 IPR037241 -
Lsi10g01142 511 MobiDBLite consensus disorder prediction 1 15 - -
Lsi10g01142 511 MobiDBLite consensus disorder prediction 1 47 - -
Lsi10g01142 511 CDD E2F_DD 266 371 IPR032198 GO:0046983
Lsi10g01142 511 Coils Coil 274 301 - -
Lsi10g01142 511 PANTHER TRANSCRIPTION FACTOR E2F 18 126 IPR015633 GO:0000978|GO:0006357
Lsi10g01142 511 MobiDBLite consensus disorder prediction 92 119 - -
Lsi10g01142 511 Gene3D - 265 371 - -
Lsi10g01142 511 PANTHER TRANSCRIPTION FACTOR E2FB 165 500 - -
Lsi10g01142 511 Gene3D - 175 248 IPR036388 -
Lsi10g01142 511 PANTHER TRANSCRIPTION FACTOR E2F 165 500 IPR015633 GO:0000978|GO:0006357
Lsi10g01142 511 SUPERFAMILY Winged helix DNA-binding domain 181 244 IPR036390 -
Lsi10g01142 511 Coils Coil 197 217 - -
Lsi10g01142 511 MobiDBLite consensus disorder prediction 483 511 - -
Lsi10g01142 511 SMART E2F_TDP_2 181 246 IPR003316 GO:0005667|GO:0006355
Lsi10g01142 511 Pfam E2F/DP family winged-helix DNA-binding domain 183 246 IPR003316 GO:0005667|GO:0006355
Lsi10g01142 511 Pfam E2F transcription factor CC-MB domain 270 370 IPR032198 GO:0046983
Lsi10g01142 511 MobiDBLite consensus disorder prediction 386 411 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01329 Lsi-Chr8:21589823 Lsi10g01142 Lsi-Chr10:15738236 1.09E-12 dispersed
Lsi10g01142 Lsi-Chr10:15738236 Lsi02g00346 Lsi-Chr2:2942389 6.00E-10 dispersed
Lsi08g01330 Lsi-Chr8:21591913 Lsi10g01142 Lsi-Chr10:15738236 6.13E-36 transposed
Lsi01g01191 Lsi-Chr1:10116350 Lsi10g01142 Lsi-Chr10:15738236 3.07E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26065 PF16421 E2F_CC-MB 3.60E-34 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01142 K06620 - csv:101219318 870.537