Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01142 | ATGTCGGGTTCTCGAGCTCCCAACTCCTCTGGACACCTGCCTGAGCAGATCATGCACTCTCTTAAGCGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCACCTGGGGACTATCACCGCTTCGCTCCGGACTCTCGACTCGCCGATCAAGAACCTGACGCTATCGTAGTCAAATCTCCACAATTGAAGAGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAACTGATAGAGCTGCCGGTCCTAGATTTACTGAGATTGTTAACAGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACCAAATGCAGTAGATCGGGGCCACAGACTCCCATGTCAAATGTTGGTAAGTTGTATATCATACATGCTAGTCCCCTTGGTTTGAAGTTAAAAATTCTATATATAAAATACCTTCTCCGATTCTTGTTTCTGAGTGAGGAAAGTGAAGCTCCTTTGCTAAAGAAATTGCGTTCACCTTCTACAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATTTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGACGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGTATGCAAAAATATGACATTGACTGCAGAAGTAGAGAACCTTACCATGGAGGAGCGTGGAATAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCCATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTACTCAGAAGCACCATGGGCCCCATAGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGTGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGATTGAACGAAGCACCTGCAACTACGATAGAAACAGAGGATACCAGGGGAAAGGAAATTGAAACACGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCGGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACAGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTATAGTATTGGCAATGTCAACTCACCCCAAACCCAGACTCCACTTCCGAATGATGCACCTGATTTGCCTTCTGCTAATCCTTCTAGCAGCTGA | 1536 | 44.14 | MSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDSRLADQEPDAIVVKSPQLKRKSEVADYEAESTDRAAGPRFTEIVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNVGKLYIIHASPLGLKLKILYIKYLLRFLFLSEESEAPLLKKLRSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQVCKNMTLTAEVENLTMEERGIDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAVEVPPSLPSSSGLNEAPATTIETEDTRGKEIETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIGNVNSPQTQTPLPNDAPDLPSANPSSS | 511 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 15738236 | 15746132 | + | Lsi10G011420.1 | Lsi10g01142 | 672699 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01142 | 511 | PANTHER | TRANSCRIPTION FACTOR E2FB | 18 | 126 | - | - | |
Lsi10g01142 | 511 | MobiDBLite | consensus disorder prediction | 386 | 402 | - | - | |
Lsi10g01142 | 511 | SUPERFAMILY | E2F-DP heterodimerization region | 268 | 371 | IPR037241 | - | |
Lsi10g01142 | 511 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Lsi10g01142 | 511 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Lsi10g01142 | 511 | CDD | E2F_DD | 266 | 371 | IPR032198 | GO:0046983 | |
Lsi10g01142 | 511 | Coils | Coil | 274 | 301 | - | - | |
Lsi10g01142 | 511 | PANTHER | TRANSCRIPTION FACTOR E2F | 18 | 126 | IPR015633 | GO:0000978|GO:0006357 | |
Lsi10g01142 | 511 | MobiDBLite | consensus disorder prediction | 92 | 119 | - | - | |
Lsi10g01142 | 511 | Gene3D | - | 265 | 371 | - | - | |
Lsi10g01142 | 511 | PANTHER | TRANSCRIPTION FACTOR E2FB | 165 | 500 | - | - | |
Lsi10g01142 | 511 | Gene3D | - | 175 | 248 | IPR036388 | - | |
Lsi10g01142 | 511 | PANTHER | TRANSCRIPTION FACTOR E2F | 165 | 500 | IPR015633 | GO:0000978|GO:0006357 | |
Lsi10g01142 | 511 | SUPERFAMILY | Winged helix DNA-binding domain | 181 | 244 | IPR036390 | - | |
Lsi10g01142 | 511 | Coils | Coil | 197 | 217 | - | - | |
Lsi10g01142 | 511 | MobiDBLite | consensus disorder prediction | 483 | 511 | - | - | |
Lsi10g01142 | 511 | SMART | E2F_TDP_2 | 181 | 246 | IPR003316 | GO:0005667|GO:0006355 | |
Lsi10g01142 | 511 | Pfam | E2F/DP family winged-helix DNA-binding domain | 183 | 246 | IPR003316 | GO:0005667|GO:0006355 | |
Lsi10g01142 | 511 | Pfam | E2F transcription factor CC-MB domain | 270 | 370 | IPR032198 | GO:0046983 | |
Lsi10g01142 | 511 | MobiDBLite | consensus disorder prediction | 386 | 411 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g01329 | Lsi-Chr8:21589823 | Lsi10g01142 | Lsi-Chr10:15738236 | 1.09E-12 | dispersed | |
Lsi10g01142 | Lsi-Chr10:15738236 | Lsi02g00346 | Lsi-Chr2:2942389 | 6.00E-10 | dispersed | |
Lsi08g01330 | Lsi-Chr8:21591913 | Lsi10g01142 | Lsi-Chr10:15738236 | 6.13E-36 | transposed | |
Lsi01g01191 | Lsi-Chr1:10116350 | Lsi10g01142 | Lsi-Chr10:15738236 | 3.07E-157 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26065 | PF16421 | E2F_CC-MB | 3.60E-34 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01142 | K06620 | - | csv:101219318 | 870.537 |