Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01159 ATGGCGGAAGAACATAGATGCCAAGCGCCGAAGCTTTGCGTCAACAACTGTGGATTCTTCGGGAGTCCGGCGACTCGAGATCTCTGTTCAAAATGTTACCGAGATCTGCAGCTAAAGGAACAACAATCCTCCTCCGCTAAACTCGCCTTAAACCAAACCCTAACATCCGCCGCTGCCGCCGCGTCATCCTTCGCGGATGCGGCGTTGTTAATTCCGAAACCGGCTTCATCGGAAGCGAACCAACCTCTGGCGGAGGTGACGGAGACGAGGACGGAAGTGGTTTCCACGCCGGCGGTCACACAGCAGCAGCAACCCAGCCGATGTACGACGTGTAGGCGGCGCGTGGGGTTGACGGGGTTCAAGTGCAGGTGCGGGATGGTGTACTGTGGGACTCACCGGTACCCGGAGCATCACGGTTGCGAATTTGACTTCAAGCGGATGGGGAAGGAGCAGATTGCGAAGGCGAATCCGGTGGTGAAAGGGGAGAAACTGCAGAAGATCTGA 504 56.94 MAEEHRCQAPKLCVNNCGFFGSPATRDLCSKCYRDLQLKEQQSSSAKLALNQTLTSAAAAASSFADAALLIPKPASSEANQPLAEVTETRTEVVSTPAVTQQQQPSRCTTCRRRVGLTGFKCRCGMVYCGTHRYPEHHGCEFDFKRMGKEQIAKANPVVKGEKLQKI 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15891245 15891748 + Lsi10G011590.1 Lsi10g01159 672716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01159 167 SUPERFAMILY AN1-like Zinc finger 93 162 IPR035896 -
Lsi10g01159 167 Pfam AN1-like Zinc finger 108 144 IPR000058 GO:0008270
Lsi10g01159 167 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Lsi10g01159 167 Gene3D - 1 61 - -
Lsi10g01159 167 ProSiteProfiles Zinc finger AN1-type profile. 102 148 IPR000058 GO:0008270
Lsi10g01159 167 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 167 - -
Lsi10g01159 167 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Lsi10g01159 167 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677|GO:0008270
Lsi10g01159 167 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 167 - -
Lsi10g01159 167 Gene3D - 83 163 IPR035896 -
Lsi10g01159 167 SMART AN1_Zf_4 108 145 IPR000058 GO:0008270
Lsi10g01159 167 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01229 Lsi-Chr1:10496040 Lsi10g01159 Lsi-Chr10:15891245 1.31E-58 dispersed
Lsi05g01302 Lsi-Chr5:20780857 Lsi10g01159 Lsi-Chr10:15891245 3.23E-25 dispersed
Lsi06g00519 Lsi-Chr6:6303234 Lsi10g01159 Lsi-Chr10:15891245 8.12E-42 dispersed
Lsi09g00363 Lsi-Chr9:3741755 Lsi10g01159 Lsi-Chr10:15891245 2.07E-46 dispersed
Lsi10g01050 Lsi-Chr10:14728401 Lsi10g01159 Lsi-Chr10:15891245 3.21E-39 dispersed
Lsi10g01159 Lsi-Chr10:15891245 Lsi02g02587 Lsi-Chr2:32315051 5.12E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01159 - - csv:101219115 254.218