Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01159 | ATGGCGGAAGAACATAGATGCCAAGCGCCGAAGCTTTGCGTCAACAACTGTGGATTCTTCGGGAGTCCGGCGACTCGAGATCTCTGTTCAAAATGTTACCGAGATCTGCAGCTAAAGGAACAACAATCCTCCTCCGCTAAACTCGCCTTAAACCAAACCCTAACATCCGCCGCTGCCGCCGCGTCATCCTTCGCGGATGCGGCGTTGTTAATTCCGAAACCGGCTTCATCGGAAGCGAACCAACCTCTGGCGGAGGTGACGGAGACGAGGACGGAAGTGGTTTCCACGCCGGCGGTCACACAGCAGCAGCAACCCAGCCGATGTACGACGTGTAGGCGGCGCGTGGGGTTGACGGGGTTCAAGTGCAGGTGCGGGATGGTGTACTGTGGGACTCACCGGTACCCGGAGCATCACGGTTGCGAATTTGACTTCAAGCGGATGGGGAAGGAGCAGATTGCGAAGGCGAATCCGGTGGTGAAAGGGGAGAAACTGCAGAAGATCTGA | 504 | 56.94 | MAEEHRCQAPKLCVNNCGFFGSPATRDLCSKCYRDLQLKEQQSSSAKLALNQTLTSAAAAASSFADAALLIPKPASSEANQPLAEVTETRTEVVSTPAVTQQQQPSRCTTCRRRVGLTGFKCRCGMVYCGTHRYPEHHGCEFDFKRMGKEQIAKANPVVKGEKLQKI | 167 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 15891245 | 15891748 | + | Lsi10G011590.1 | Lsi10g01159 | 672716 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01159 | 167 | SUPERFAMILY | AN1-like Zinc finger | 93 | 162 | IPR035896 | - | |
Lsi10g01159 | 167 | Pfam | AN1-like Zinc finger | 108 | 144 | IPR000058 | GO:0008270 | |
Lsi10g01159 | 167 | ProSiteProfiles | Zinc finger A20-type profile. | 7 | 41 | IPR002653 | GO:0003677|GO:0008270 | |
Lsi10g01159 | 167 | Gene3D | - | 1 | 61 | - | - | |
Lsi10g01159 | 167 | ProSiteProfiles | Zinc finger AN1-type profile. | 102 | 148 | IPR000058 | GO:0008270 | |
Lsi10g01159 | 167 | PANTHER | ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 | 1 | 167 | - | - | |
Lsi10g01159 | 167 | SMART | A20_3 | 10 | 34 | IPR002653 | GO:0003677|GO:0008270 | |
Lsi10g01159 | 167 | Pfam | A20-like zinc finger | 12 | 34 | IPR002653 | GO:0003677|GO:0008270 | |
Lsi10g01159 | 167 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 1 | 167 | - | - | |
Lsi10g01159 | 167 | Gene3D | - | 83 | 163 | IPR035896 | - | |
Lsi10g01159 | 167 | SMART | AN1_Zf_4 | 108 | 145 | IPR000058 | GO:0008270 | |
Lsi10g01159 | 167 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 12 | 54 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01229 | Lsi-Chr1:10496040 | Lsi10g01159 | Lsi-Chr10:15891245 | 1.31E-58 | dispersed | |
Lsi05g01302 | Lsi-Chr5:20780857 | Lsi10g01159 | Lsi-Chr10:15891245 | 3.23E-25 | dispersed | |
Lsi06g00519 | Lsi-Chr6:6303234 | Lsi10g01159 | Lsi-Chr10:15891245 | 8.12E-42 | dispersed | |
Lsi09g00363 | Lsi-Chr9:3741755 | Lsi10g01159 | Lsi-Chr10:15891245 | 2.07E-46 | dispersed | |
Lsi10g01050 | Lsi-Chr10:14728401 | Lsi10g01159 | Lsi-Chr10:15891245 | 3.21E-39 | dispersed | |
Lsi10g01159 | Lsi-Chr10:15891245 | Lsi02g02587 | Lsi-Chr2:32315051 | 5.12E-45 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01159 | - | - | csv:101219115 | 254.218 |