Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01166 ATGTTCCCTTCTTGGCCAATCAAATACCAACAAACTTCAAGAGGAATTGGTTTGAGAAGAAGCGAAGAGAGCAGAGATGAGTCAGGATCAGCTGTGAAAACTCATAGAAGAAGCAAATCTAATAATAATCATAATGAAGAAGGGGATTTGGAATTGGAAATAGAAGAGGAAGAAGAAGAAGAAGAATCTGAGATGAGTAAAAAGGGTTGTTGTTCATCTTCTTCTTCAGGTCAAGATCAGAGCTTTATTCAGAAGCATTTACAGCAGATGATTCAACCTGAAATGATGCTCAGTGATATTTCAACAACTGCACTTTCATCTCAACATCAATCCCTTCAACAAAAGAGAAAAGGATGTGGTTCCATTTCAACATCACAGAAACAACTTGACGCTAAGACATTGAGACGTTTAGCTCAGAACAGAGAGGCTGCGAGGAAGAGTCGACTAAGGAAAAAGGCTTACGTACAGCAACTTGAGAGCAGTAGAATCAAGCTTACGCAGCTTGAGCAAGACCTTCAACGGGCACGATCTCAGGGTTTGTTTTTAGGTGCCTGCGGTACTGGCGGCGGCATTGTCAGTCCCGATCATCGACACACGGTGGAGCTGCGTGGAGGACTGGAGGCAAGTCTACCAGATGTGGAGTTGAGTTTGAGGGTAGATTCTTGTATTTCCCATTACGATCAAATTTTCCGATTGAAAGGTCAGGCTGCTAAGTCCGACATCTTCCATCTCATCACTGGAATTTGGATGTCTCCGGCCGAGCACCCAATAACAGAACAACAAGTGATGGAAATTTACAAGCTGCAACATTCGTCACAGCAAGCTGAAGATGCTTTATCTCAAGGCCTTGACCAGCTCCATCAGTCTTTGACCAACGCCGTTGCCGGTGGTCCGGTCATCGACGGTATCAACCACATGGTTTTGGCCATGGACAAGCTCTCCAGTCTCCAAGGCTTTCTCCATCAGATTAATCATTATTGTGTGGAGTATAAG 993 44.21 MFPSWPIKYQQTSRGIGLRRSEESRDESGSAVKTHRRSKSNNNHNEEGDLELEIEEEEEEEESEMSKKGCCSSSSSGQDQSFIQKHLQQMIQPEMMLSDISTTALSSQHQSLQQKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGACGTGGGIVSPDHRHTVELRGGLEASLPDVELSLRVDSCISHYDQIFRLKGQAAKSDIFHLITGIWMSPAEHPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHQSLTNAVAGGPVIDGINHMVLAMDKLSSLQGFLHQINHYCVEYK 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15933908 15940799 - Lsi10G011660.1 Lsi10g01166 672723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01166 331 SMART brlzneu 128 219 IPR004827 GO:0003700|GO:0006355
Lsi10g01166 331 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 130 174 IPR004827 GO:0003700|GO:0006355
Lsi10g01166 331 MobiDBLite consensus disorder prediction 49 63 - -
Lsi10g01166 331 Gene3D - 131 181 - -
Lsi10g01166 331 MobiDBLite consensus disorder prediction 18 48 - -
Lsi10g01166 331 PANTHER TRANSCRIPTION FACTOR TGA9 1 322 - -
Lsi10g01166 331 Coils Coil 151 178 - -
Lsi10g01166 331 Pfam Seed dormancy control 200 256 IPR025422 GO:0006351|GO:0043565
Lsi10g01166 331 SUPERFAMILY Leucine zipper domain 132 174 IPR046347 GO:0003700|GO:0006355
Lsi10g01166 331 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 135 150 IPR004827 GO:0003700|GO:0006355
Lsi10g01166 331 PANTHER TRANSCRIPTION FACTOR TGA9 1 322 - -
Lsi10g01166 331 MobiDBLite consensus disorder prediction 1 17 - -
Lsi10g01166 331 MobiDBLite consensus disorder prediction 1 81 - -
Lsi10g01166 331 Pfam bZIP transcription factor 131 173 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00453 Lsi-Chr3:5134947 Lsi10g01166 Lsi-Chr10:15933908 6.92E-46 transposed
Lsi03g01615 Lsi-Chr3:27278710 Lsi10g01166 Lsi-Chr10:15933908 1.93E-61 transposed
Lsi04g00016 Lsi-Chr4:217909 Lsi10g01166 Lsi-Chr10:15933908 1.05E-63 transposed
Lsi08g00395 Lsi-Chr8:10972139 Lsi10g01166 Lsi-Chr10:15933908 3.92E-57 transposed
Lsi08g00928 Lsi-Chr8:17665259 Lsi10g01166 Lsi-Chr10:15933908 2.56E-58 transposed
Lsi03g01716 Lsi-Chr3:28531305 Lsi10g01166 Lsi-Chr10:15933908 6.80E-63 transposed
Lsi10g01166 Lsi-Chr10:15933908 Lsi03g00118 Lsi-Chr3:1664079 8.16E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26070 PF14144 DOG1 1.70E-13 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01166 K14431 - csv:101223216 356.295