Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01177 ATGAGCGGCGAAAGCCGACGGCGAGGCCGTGCAGATAAGAGTAGTAGGTCGAAGAAGCAGAGGATAATCCGGTCAGCCGAGGAGGAGATCGAATCAAAGCTTGGACTTGATCTCTTCTCTGAAGGCGATAAGAGGCTTGGATGGTTGCTCACTTTCGCTCCTTCATCTTTGGAGGATCAGGATACTGGAAAGGTCAATAGTTGTATTGATCTTTATTTTGTGACACAGGATGGGAGCAGCTTCAAGTCAAAATATAAGTTTCGTCCTTATTTCTATGCAGCAACAAAGGATAAAATGGAAATTGATGTGGAGGCATATTTGAGACGACGTTATGAAGGTCGAATAGCTGATATTGAGATTTTAGAGAAAGAAGACCTTGATCTTAAGAATCATCTGTCAGGATTGCGCAAGGCATATTTGAAACTATCATTTGACACTGTTCAAGAATTGATGAATGTGAAGAGTGAACTATTGCATGTTGTTGAAAGCAACTGGGCAAAGTCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGTAAAAGGGAACAAAAGCCTCAAGATTTTCTAGAATGCATTGTTGATCTTCGAGAGTATGATGTTCCTTACCATGTTCGCTTTGCTATTGATCATGATTTACGCTGTGGACAATGGTACGATGTTAGTGTATCAAGCACTGGTGTTACACTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCACATATGTGCATTTGATATTGAAACCACAAAGCTACCATTGAAATTCCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAAAATTTGGAGTACACTCCAAAACCAGAATACGAAGGGTTCTTTAAAGTGACCAATGTGAAAAATGAGGAAGTAGGATTTCAATGCGACAAGAATCAGGGGGAATGTCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAGGGTAGCCATGGTTTGAAGGCTGTCACAAAGGCTAAATTGGGTTATGATCCTCTTGAAGTGAATCCTGAGGATATGGTGCGGTTTGCAAAGGAAAAGCCTCAGATGATGGCTTCCTATTCGGTTTCAGATGCTGTTGCTACATACTACTTGTACATGACCTATGTTCATCCTTTCATTTTTTCTCTAGCAACTATTATACCAATGTCACCAGATGAGGTGTTGCGCAAGGGAAGTGGGACACTTTGTGAAATGCTTCTAATGGTTCAGGCTTACAAGGCTAGTGTTGTGTGTCCTAACAAACATCAATCAGATCCAGAGAAGTTCTACAGCAATAGGCTTCTTGAAAGTGAGACATACATTGGTGGTCACGTAGAATGCCTAGAGAGTGGTGTATTTAGATCTGATCTTCCTACCAGTTTTAGGCTTGATCCATCTGCTTATGATCAATTGATATACAATTTAGATAGAGATCTGCAATATGCCATACAAGTAGAAGGAAAGATGGACTTGGAGTTGGTGTCAAATTATAGCGATGTGAAGAATGCTATCATGGAAAAGATGAGGTTTGTACTGCTTGTGATTTCAATCGTCCTGGGAAAACTTGCCTACGAAAACTTGAATGGGTTTGGCGTGGAGAGTGACTATTATCATCTGAAGAAGCAAATTGAGTCTGAGTTTGTTGATAGCGGTAATGTTCGGTTGTCAAAATCATTCCTTGAACTTCCAAAGTTGGAGCAGCAAGCTAAGCTCAAAGAGCGTTTAAAGAAATACTGCCAGAAGGCTTATAAACGAGTACTTGATAAGCCAGTCACTGAAGTTCGAGAAGCAGGGATCTGCATGAGAGAAAACTCTTTCTATATTGACACTGTTCGTAGAAGGTACGAGTACAAAGGGCTCAATAAAGTATGGAAGGGAAAATTATCAGAAGCTAAAGCGAGCGGAAATTCAATTAAGATACAGGAAGCCCAAGACATGGTAGTTCTTTATGATTCTCTACAACTCGCTCATAAATGTATCCTCAACTCCTTTTATGGATATGTAATGCGAAAGGGTGCTCGATGGTATTCAATGGAAATGGCTGGGGTAGTTACATATACAGGAGCAAAAATCATTCAGAATGCTCGTCTGTTAATTGAGAAAATTGGAAAACCACTGGAGTTAGACACCGATGGTATTTGGTGTGCTCTACCTGGATCGTTCCCAGAGAACTTTACCTTCAAAACAAGAGATTCAAAGAAGTTGACAATTTCATATCCATGTGTTATGCTTAATGTTGATGTGGCAAGGAACAACACGAATGACCAGTACCAGACACTTATAGATCCTGTGAAGAAAACATATAAAACACACAGTGAATGCTCAATTGAATTTGAAGTAGATGGACCATATAAGGCAATGATTCTTCCTGCTTCCAAGGAAGAAGGCATTTTGATCAAGAAGAGATATGCTGTCTTCAATGATGATGGAACACTTGCCGAGCTAAAAGGCTTTGAGATCAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCAGAACTTTTTGACAAGTTTCTTCATGGTTCCACCTTAGAAGAATGCTATTCAGTTGTTGCATCTGTTGCAAATCGATGGCTAGATCTTCTAGATAATCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCTGAATCAAGTACCATGAGCAAGTCTTTGGTAGACTATGGTGAGCAAAAGTCTTGTGCTGTTACCACTGCCAGACGTCTTGCAGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGTCAATATATAGTTGCGTGTGAACCTAAGGGTACTCCTGTAAGTGAGCGTGCTGTTCCAGTTGCAATCTTTGAGACTGATGCAGAAATAATGAAATTTTATGTACGTAAATGGTGCAAGATTTCATCTGAAGTCGGCATCCGATCCATCATTGACTGGTCCTACTACAAGCAACGCTTAAGCTCAGCCATTCAAAAAATTATAACAATTCCAGCAGCCATGCAAAAGGTTGCAAATCCTGTTCCTAGGGTGGTCCATCCTGATTGGTTACATAAGAGAGTTCGTGAGAAGGATGATAAATTTCGCCAACAGAAAGTAGCTGATATGTTTGCATCCTCAAACAGAGTTAAATATTCAAAGAAGAATAGTGATGTTAGCTGCAGCAAACATGCTATGAATGATGATAATTCTGAAGATTTAGAAGATTTTCAAAAGAAAACAAGTTCTACAAATGGCCCCAAACCAGTTGTCCGATGTTATGATGTCAGAGGCATGAAACATTCACTTATGAGCGATAGCGAAATAAACTCCAAGATGCAGGAGAATTTTAATGATGGAGGATGTGAGCCTTCTTCACCCTTGCATGTTGAAAACATAGACAAAAATGTAGATTACAGTGGATGGCTTGAAATGAAGAAGCGAAAATGGAAGGATACTTTGGACAAGAGGAAGAAGCAAAGGTATGTTGTCTTCTGTCAGATCAAATCACGAAAATTGATTTTGGTGGCTGAAAATTTCCATGCAATTGGTGTATGGTTGGTAAGTTTAAGGACTCCACTTGCTGCTAATAATGTTACACGAGAGTTAAATGGTTCTACGAATAATAAAGAGGCTCCTAGAACAGGTGTTGGTTCATATTTTAAGAGGCATGAAGGATCTGTAACACGCAGCCATTGGCAGATTTTACAGCTTGTTCATAGTTCACAGAGTGGCCAATATTTTGCTTGGGCTGTTGTTGAAGGAGTTATGCTAAAGATCCCTATTAATGTTCCTAGAGTTTTTTACCTTAATTCTAAAGTACCTATTACAGATGAATTTGTGGGGAGGCGTGTTAATAAAACTCTTCCCCATGGAAGGCACAGTTATAACCTGTATGAGGTTGTGACTGATGAGGGTCAATATAGGACACAGAGGAATAAACTTGCAGCCCTACTTGCAGATCCAGAAGTAGAGGGAATCTATGAAAGCAAGATACCATTGGAGTTCAAGTCCATCTTTCAGATTGGCTGTGTCTGTAAAGTTGATAAAACTGCTAACAAACGAAACATTCAAGACGGATGGAGTCTGGATGAACTGCAAATGAAGACTACAACAGAATGCAGTTATCTGGATAAGTCAATCTCTTTCTTCTATGTGTATCATAGCATTTCTGAAGGAAGAGCTATCTACATTACCTTTTTTCCCTCCACAAGATCAATATTTGTGGTGGTGGTTAATCCTTACCAAAACAAAGACTTGTCATCAACTTTTCTTGAAAGGCAATTTCGTGAAGCTTGTCAAATGCTGTCTGGTGAATCACAACCTCCTAAGAGTGGTATAACTTACAAGGTTGACTATGTTGTTAACATCAAAGAAGCTGAAGTGATTTTGCAAAGATCGATAACAGAACACAGGAGCACAAACCATGGACCAATTCTAGCTGTAATTCAATGCCCAAATGTACAACGGCTGAAGTCAAGTGTGAGAGTATTAGATGATTTTCCATGCGTGACCATTCCTTCTAATGCTCGTGATAACCAATATCAGGTTCTTGGTTGGCAACAAACAGCTGCAAAGATTGGAATGCAACGTTGTGCTGCATCATCCCAATGGTTGAATGAGAGAATCTCTCTTGCAAGATATGCCCATGTACTTTGGATATCGGATGATGGTGTTCCAGATATAGGAGGCATTAACATGGAAGATGTGTGTTTCGCTGATGAGGTCCAACAACCTATTCTGACGTATCCTGGAGCATATAGAAAAGTTTCTGTGGAGCTTAAGATCCATCATTTGGCTGTCAATGCTCTGCTGAAGAGCAACCAAGTGAATGAAATGGAAGGAGGTAGTTTGTTTGGCTTTGAACGTGATATGCAATGTGGGGCCCAACTTTCTAATGAAGAAGGTGGCTTTGATGAGGCTGCTTCATGTGCTCCGGCATTTCGTGTCCTGAAACAATTGATACAAAGGTGCCTTGCAGATGCTGTTACATCTGGAAATGTATATGCTGATGGAATTTTGCGGCATCTGTACAGATGGATTTGCAGCCCCCAATCAAAACTTCACGACCCAGCTCTTCATCGTTTGCTCCACAAGGTTATGCAAAAAGTGTTTGCTCTTTTGTTGGCTGAGCTACGCAAATTAGGTGCAACCATTATATTTGCAAACTTCTCAAGAATTATTATAGACACGGGAAGGTTTGATCTCTCTTCTGCTAAAGCATACTGTGATAGCTTGCTGAAAACAGTGCAAACAAGGGATCTGTTCGAGTGGATTGAGCTGGAACCATTACAGTTCTGGCACTCCCTGTTGTTCATGGATCAGTATAACTATGGTGGAATCCCGGCAAAAGATGATGAGAGCACAGATGTTGAATCTCAAGTTGATATAGTGGCCAACTGGAACATTGCCGAGTATCTACCCAAGAAGATTCAGGATCACTTTGTTTTTATCATCTCCCAGTTTTTGTATATTCCATGGAATTATGCAACCAAGCAAGCTGCAGCAAGAGCATCATTGCATCGTGATGACACATGTACCCCATCCATTACTGTTGTAGCTGCTGAATCGTTTGAATCACAGGTGACAGAAAATCTGAAAGAACAGCTAAGCTCTTACTTCAGTGACAAAATGTTGGGAATTGTTCGTGACATTGTTCTGCATATGAAAGGGAAGGAAAAGAACACCCAGGATATTTTACCCGAAGAACCTTCTGGTAATATCCACAAAGGAGATGCTGCATTGGAATTCATTAAGCTCGTCTGCTCTGTTTTGGCTCTTGATCAAAATGTTCAGCATGATGTTCTGGTAATGAGGAAAAATTTACTGAAGTTTGTGCGTGTAAGAGAGTTTGCACCAGAAGCTGAGTTTTCTAATTCCAGCCCGTCCATAATCTTACCCAACGTTATTTGCAGCTATTGTGACGATTGTCGAGATTTGGATTTATGCCGCGACTCGGCTTTACTAGCACAGGAATGGCGCTGTGCTGTGCCACAATGTGGACAACCATATGACCAAGAAGTGATGGAAAACGCTCTACTTCAAATCGTGCGGCAGAGGGAGCGCCTCTATCACATGCAGGATCTGGTATGTATACGCTGCAACCAAGTCAAAGCAGCTCATTTATCAGAACAGTGTGCTTGTGCCGGCACATTTAAATGCAAAGAAGAAGCACCAGAATTTTTCAGCAAGATGCAGATTTTTCTTAATGTAGCCACTCGTCAAAAGTTTCAACTATTGCAAGAGTTTACCTCGTGGATGTTAAAAGACTCGTGA 6321 40.45 MSGESRRRGRADKSSRSKKQRIIRSAEEEIESKLGLDLFSEGDKRLGWLLTFAPSSLEDQDTGKVNSCIDLYFVTQDGSSFKSKYKFRPYFYAATKDKMEIDVEAYLRRRYEGRIADIEILEKEDLDLKNHLSGLRKAYLKLSFDTVQELMNVKSELLHVVESNWAKSDAAEAYDSILFGKREQKPQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTGVTLEKRKDLLQRAEVHICAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFKVTNVKNEEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKASVVCPNKHQSDPEKFYSNRLLESETYIGGHVECLESGVFRSDLPTSFRLDPSAYDQLIYNLDRDLQYAIQVEGKMDLELVSNYSDVKNAIMEKMRFVLLVISIVLGKLAYENLNGFGVESDYYHLKKQIESEFVDSGNVRLSKSFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVTEVREAGICMRENSFYIDTVRRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTRDSKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKTYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLVDYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKRVREKDDKFRQQKVADMFASSNRVKYSKKNSDVSCSKHAMNDDNSEDLEDFQKKTSSTNGPKPVVRCYDVRGMKHSLMSDSEINSKMQENFNDGGCEPSSPLHVENIDKNVDYSGWLEMKKRKWKDTLDKRKKQRYVVFCQIKSRKLILVAENFHAIGVWLVSLRTPLAANNVTRELNGSTNNKEAPRTGVGSYFKRHEGSVTRSHWQILQLVHSSQSGQYFAWAVVEGVMLKIPINVPRVFYLNSKVPITDEFVGRRVNKTLPHGRHSYNLYEVVTDEGQYRTQRNKLAALLADPEVEGIYESKIPLEFKSIFQIGCVCKVDKTANKRNIQDGWSLDELQMKTTTECSYLDKSISFFYVYHSISEGRAIYITFFPSTRSIFVVVVNPYQNKDLSSTFLERQFREACQMLSGESQPPKSGITYKVDYVVNIKEAEVILQRSITEHRSTNHGPILAVIQCPNVQRLKSSVRVLDDFPCVTIPSNARDNQYQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVLWISDDGVPDIGGINMEDVCFADEVQQPILTYPGAYRKVSVELKIHHLAVNALLKSNQVNEMEGGSLFGFERDMQCGAQLSNEEGGFDEAASCAPAFRVLKQLIQRCLADAVTSGNVYADGILRHLYRWICSPQSKLHDPALHRLLHKVMQKVFALLLAELRKLGATIIFANFSRIIIDTGRFDLSSAKAYCDSLLKTVQTRDLFEWIELEPLQFWHSLLFMDQYNYGGIPAKDDESTDVESQVDIVANWNIAEYLPKKIQDHFVFIISQFLYIPWNYATKQAAARASLHRDDTCTPSITVVAAESFESQVTENLKEQLSSYFSDKMLGIVRDIVLHMKGKEKNTQDILPEEPSGNIHKGDAALEFIKLVCSVLALDQNVQHDVLVMRKNLLKFVRVREFAPEAEFSNSSPSIILPNVICSYCDDCRDLDLCRDSALLAQEWRCAVPQCGQPYDQEVMENALLQIVRQRERLYHMQDLVCIRCNQVKAAHLSEQCACAGTFKCKEEAPEFFSKMQIFLNVATRQKFQLLQEFTSWMLKDS 2106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16026004 16061595 - Lsi10G011770.1 Lsi10g01177 672734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01177 2106 CDD POLBc_epsilon 459 1025 - -
Lsi10g01177 2106 Gene3D - 844 1028 IPR042087 -
Lsi10g01177 2106 SUPERFAMILY DNA/RNA polymerases 425 1042 IPR043502 -
Lsi10g01177 2106 SMART DUF1744_2 1439 1796 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Lsi10g01177 2106 Pfam DNA polymerase family B 659 973 IPR006134 GO:0000166|GO:0003677
Lsi10g01177 2106 Gene3D DNA Polymerase, chain B, domain 1 57 234 - -
Lsi10g01177 2106 Pfam DNA polymerase family B, exonuclease domain 75 314 IPR006133 -
Lsi10g01177 2106 Pfam Domain of unknown function (DUF1744) 1565 1796 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Lsi10g01177 2106 MobiDBLite consensus disorder prediction 1 23 - -
Lsi10g01177 2106 SMART polmehr3 240 746 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lsi10g01177 2106 MobiDBLite consensus disorder prediction 1071 1104 - -
Lsi10g01177 2106 Gene3D - 239 312 IPR036397 GO:0003676
Lsi10g01177 2106 Gene3D Palm domain of DNA polymerase 655 840 IPR023211 -
Lsi10g01177 2106 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 31 536 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Lsi10g01177 2106 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 560 2103 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Lsi10g01177 2106 SUPERFAMILY Ribonuclease H-like 60 423 IPR012337 -
Lsi10g01177 2106 MobiDBLite consensus disorder prediction 1071 1094 - -
Lsi10g01177 2106 Gene3D - 313 461 IPR036397 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01712 Lsi-Chr2:22844764 Lsi10g01177 Lsi-Chr10:16026004 0 dispersed
Lsi02g01713 Lsi-Chr2:22854416 Lsi10g01177 Lsi-Chr10:16026004 1.36E-81 dispersed
Lsi02g01714 Lsi-Chr2:22855717 Lsi10g01177 Lsi-Chr10:16026004 3.73E-101 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01177 K02324 - csv:101208568 3854.68