Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01180 GTTTCTTTGAATCAGAGTGGATCCGAGTCCGAGACTTTTGATGTTTCGTTTCGAAGTTCTTGGAAGATTGCTGGTGGGTTCAACTCAGCTAATGAAAATGGGTTAGCAGTTCTAGCCAAGGCCACATCTTCTCTCTCCCTCTCTATTGTTATACCCCAAAAGATGACTACACTAGCCAGTACTTCTGAAATTGTTGAATCAACAGAAGAATTTGATTCTGAGAAAGCTGGGACGAGTTACGCGCTAGATGTAGGAAAAAAGTTTTCTATAGAGGATGACATTAACCGTCTGTTTCAAGCAATTGATATCAGAACCTTACGTAAGAGGTCAGGCCAGCAACGTGAAGTTGATAAAGATGCTCTGCGGAAGAGTGCGATGAAAAGACCAGTTAGAGTAGGTTCATCTCACATGGCAGGGATTGGAATTTCTGAACCTGCAAGTTTAAAGCAGGCTTTGAGGGGCTTATGCATATCCCAGGCTGCAGAAATGGCTGCTTCAAAGAGGCTAACAAGGTCTGTAGGTTCACCCAGAATCTCTGAAGCAGGAACTATCAAAAGATTGTATAGGGCGGTGGTGGTTGAGGCCAATGGATCTGGTGTGCCTGTAAATGAAAGCAAAGCAAATTTGGTAGAAATTTCTATTGTGTCAGAAAGAATTATGTCAACTTTTCAAAATAAGATGCCTGAATTGTTGCATAAAACTGAGGCTGATATACCAAACCAAGGAGCTGAGTCTTCTTCTTTCAAGGATACTGGGGTATCAGAAGAGGCGAGTGTGGAAAGATTGATGACAAAGGATCTTGTTGTTAATACGGCTACTGAGGTGACAAGTATCAAGCCACCTGGTGAGGTGGGAAAACTTAAATCTCCTTCCTTTACTCCTTCTGGTGAGAAGGATCTGGCTGTGAACAGTATGGCTATTTCCTCAACTGAAGATTTGACAAAAAATTCAGTGCCAGAGAAGGAGAGAGGTACAAATGGTTGTTTATCTTCTCTATCAAGCTCTGGATCTGTTGTCAGGCAGAACAAATCAGCTTTCAATAATACACGCTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAGCTTGAACCAAATTCCTCCCCTAGTATGTTTGATGTCTGCACAGTAAAGGTTGACACTGATTTGGCTACCATAGCAGAAAAGTCTGAGAACCAGATGCCAGAAAATGCACAGCATCATGAGATTAAAGAAGAAGATAAAGGTTCTTCTGTCTCTAGTAACATAACTTTAGGTGTTGAAGTAAGTGGAAATGTAGTAAACAAAGAATCTAGTAGACCTGGTACATCTCTCAACTGCTGTAACAGGAACAGACCAACTATTATGCCATCTGAGGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAGAGCTCCAAAAGTAGCGTTGGTGAATGTAGCAGTAGCCCAAGCATCAGTGGGGAAAGTATTCTCAGTGGATCAAGTCGTAGTGGAGTTAGGCCTCACATGTCAAAGGACTTAAAATGGGAAGCTATCCACCACCTTCAGGATCAACATAAATGCCTAGGTCTGAGAAACTTCAAGCTGCTAAGGAGACTTGGTCTCGGGGACATTGGGACTGTTTATCTCTCTGAGCTTTGCGATTCAAGCTGTCTTTTTGCTATTAAAGTGATGGACAAGGAGTTCTTGGCAAGTAGGAAAAAAATAATTCGGGCACAAACTGAGAGAGAGATACTGCAAATGCTCGACCACCCATTTCTCCCTACATTATATGCCCATTTTGAGACGGATAAGCACTCATGCTTGGTCATGGACTACTGTCCCGGTGGAGATCTCCATGTGTTGCGACAGAAGCAACCATGCAAGAGTTTCTCTGAGCGTGCAGTCAGGTTCTATGTTGCCGAAGTTCTTCTTGCACTGGAGTACTTACACTTGCTAGGTGTTGTTTATCGAGACCTGAAACCCGAAAACGTCCTGGTCCGAGAAGATGGGCACATCATGCTCACAGATTTTGATTTGTCCCTTAGATGTGCTGTTAACCCAACGCTTCTTCAGTCATCATCTCCAGTTGTGGAATCCACTAAGAGGACGTTGAATCCCTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCATCCATCCTGGCAGGTCTCATGTTTCACTCCAAAAGTTTTATCTGCTCCATACAAATCCCGGAGAACGAAAACTGATCATCAGGCTAGTCTATTACCACAGCTTATAGTTGAACCAACTGGTGCACGGTCCAATTCATTTGTAGGAACCCACGAATACCTCGCTCCTGAGATTGTCAAGGGTGACGGCCACGGGAGCGCTGTTGATTGGTGGACTTATGGGATTTTCCTGTTTGAGCTACTATATGGTAAGACTCCCTTCAAAGGTTCAGGAAATGAGGACACATTAGTGAACATAGTATCCCAAACTCTCAAGTTCCCCGATTGCCCCATAGTTAGTTTTCATGCAAGAGACCTGATCAGATGTCTGCTGACAAAGGAGCCCGAAAACCGATTAGGCTCGACAAAAGGGGCTATCGAGATTAAGCAGCATCCATTTTTCGAAGGCCTCAATTGGGCTCTTATACGTTGTGCAACACCACCTGAGCTTCCCAAGTTTTTTGACGGTGGAACTAGTGCAATGCAAGTGGATTCTGGGGAGAATACGAAGCGTAGAGATCTAGAGAATATGGAAGTAGATGCAACAATGTTTGACCTGTTTTAG 2739 43.48 VSLNQSGSESETFDVSFRSSWKIAGGFNSANENGLAVLAKATSSLSLSIVIPQKMTTLASTSEIVESTEEFDSEKAGTSYALDVGKKFSIEDDINRLFQAIDIRTLRKRSGQQREVDKDALRKSAMKRPVRVGSSHMAGIGISEPASLKQALRGLCISQAAEMAASKRLTRSVGSPRISEAGTIKRLYRAVVVEANGSGVPVNESKANLVEISIVSERIMSTFQNKMPELLHKTEADIPNQGAESSSFKDTGVSEEASVERLMTKDLVVNTATEVTSIKPPGEVGKLKSPSFTPSGEKDLAVNSMAISSTEDLTKNSVPEKERGTNGCLSSLSSSGSVVRQNKSAFNNTRFIKPIFRTKNFVKKKAKLEPNSSPSMFDVCTVKVDTDLATIAEKSENQMPENAQHHEIKEEDKGSSVSSNITLGVEVSGNVVNKESSRPGTSLNCCNRNRPTIMPSEERSRSREKGMFSQSSKSSVGECSSSPSISGESILSGSSRSGVRPHMSKDLKWEAIHHLQDQHKCLGLRNFKLLRRLGLGDIGTVYLSELCDSSCLFAIKVMDKEFLASRKKIIRAQTEREILQMLDHPFLPTLYAHFETDKHSCLVMDYCPGGDLHVLRQKQPCKSFSERAVRFYVAEVLLALEYLHLLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPTLLQSSSPVVESTKRTLNPCDESSCIDPFCLHPSWQVSCFTPKVLSAPYKSRRTKTDHQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGDGHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLVNIVSQTLKFPDCPIVSFHARDLIRCLLTKEPENRLGSTKGAIEIKQHPFFEGLNWALIRCATPPELPKFFDGGTSAMQVDSGENTKRRDLENMEVDATMFDLF 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16085006 16088561 + Lsi10G011800.1 Lsi10g01180 672737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01180 912 MobiDBLite consensus disorder prediction 399 414 - -
Lsi10g01180 912 MobiDBLite consensus disorder prediction 432 499 - -
Lsi10g01180 912 MobiDBLite consensus disorder prediction 467 499 - -
Lsi10g01180 912 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Lsi10g01180 912 ProSiteProfiles Protein kinase domain profile. 527 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01180 912 SUPERFAMILY Protein kinase-like (PK-like) 501 878 IPR011009 -
Lsi10g01180 912 CDD STKc_phototropin_like 527 877 - -
Lsi10g01180 912 Gene3D Transferase(Phosphotransferase) domain 1 607 675 - -
Lsi10g01180 912 MobiDBLite consensus disorder prediction 395 417 - -
Lsi10g01180 912 Gene3D Phosphorylase Kinase; domain 1 525 606 - -
Lsi10g01180 912 PANTHER FLIPPASE KINASE 1-RELATED 55 889 - -
Lsi10g01180 912 Gene3D Transferase(Phosphotransferase) domain 1 754 877 - -
Lsi10g01180 912 SMART serkin_6 527 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01180 912 MobiDBLite consensus disorder prediction 432 453 - -
Lsi10g01180 912 Pfam Protein kinase domain 528 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01180 912 Pfam Protein kinase domain 756 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01180 912 MobiDBLite consensus disorder prediction 311 334 - -
Lsi10g01180 912 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 55 889 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01169 Lsi-Chr2:14326633 Lsi10g01180 Lsi-Chr10:16085006 0 dispersed
Lsi05g02229 Lsi-Chr5:28852635 Lsi10g01180 Lsi-Chr10:16085006 5.13E-172 dispersed
Lsi07g00832 Lsi-Chr7:9297927 Lsi10g01180 Lsi-Chr10:16085006 1.77E-101 dispersed
Lsi10g01180 Lsi-Chr10:16085006 Lsi11g00302 Lsi-Chr11:3127972 7.35E-113 dispersed
Lsi02g02126 Lsi-Chr2:27482479 Lsi10g01180 Lsi-Chr10:16085006 5.43E-67 transposed
Lsi01g01244 Lsi-Chr1:10598547 Lsi10g01180 Lsi-Chr10:16085006 8.02E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83975 PF00069 Pkinase 1.60E-36 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01180 - - csv:101206786 1528.07