Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01227 ATGCTTTCACTGCGTTCATGTTACTATCTACGGCCCATCACATTGCCTCATCCCCAATTCAAGAAACTCATCTTCTCCAACAACCCTCCCTCTTTCAAACCCATTTTTCAGAATTTTGTTTCACCAATGTCTTCTCGTCCTTCCGCGTTCGATGCTCTCATGTCTGGTGCTCGGGCCGCTGCCAAGAAGAAGCCTGTTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCTTTAGACCCTCCTCCGAAACCTAGCTCTTCCCCTGCTCTGGAGTCAACGCCGCCTGTTGAATCGCAGTGCGGCAGTTCAATCACAAATTTAGACAATCATGGAAGTACTCATCTGGTAAAGTCCGAGGACGCTGCAGATTTGGGGGAAACCAAGTTGCGTCAGGATAATGGTGGCATTGTTGGACCCAAGAATGGGCCGTTTGCGAACAAGACGTGTGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATTCCAGAATTGAAAAAGAAGGCCAAGGATTTCAACTCGAAGACTGTTGCATGTTGGAAAGAGGGCGAACGGGTTCCATTTTTGTTTCTGTGTTTGGGTTTCGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCAGCTCATGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCTAAAGCGAGCCGTTCATCTCAATCTATGATGCGAAAGCCCGATGCGTTAACTATTACCAAAGTATTTGACACATTTCGGCTGATTGCTAAGGAATCTGGCAAAGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGATTGCGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGGCAAGCAGCTGTATATGCTGAAGAACACTCAACACCACCACCGAATATTCAATCTCCTCTAGAAGAGGCTTCTAAGATTGTAAAGCAGGTGTATTCTATACTCCCAGTTTATGATAAACTTGTCCCTGCTCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCTATGCTGGCAAAACCAACAAAAGGAGTGTCTGAGATCTTAAATAAATTCCAGGGTATGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGATGTTGTTCTCACGGTATCAAGGATAAAGAAACCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAAAAGATTCTGCCTTTTCAGATTCTGAGTACTCGAGCTCGTAAGAATGTGGCCGTGAGTGATATTAAGGTTGAAGTGTGTGTCTTTGCTTTTGATTTACTGTATCTTGATGGTCAACCACTTATCCAGAGAGAACTTAATGTTCGTCGAGAGCTTCTCTACGATTCATTTATTGAAGAACCTGGATATTTTCAATTTGCCACAGCCATAATAACAAATGATCTTGAGGAAATACAAAAGTTCCTTGATGCATCGGTTGATCAAAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGGGATGCTACTTATGAGCCTTCCAAGAGGTCACATAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCGCTTGATCTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTTCTTGCCTGTTATGATAACGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCAGCAGACTTGACTATTAGCCCAGTTCATCGTGCAGGAGTCGGCATTGTGGATTCTGACAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCAGAAGAAGCCTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAAAACAATCAAGATGACAATGAAGACGACTAA 2415 42.94 MLSLRSCYYLRPITLPHPQFKKLIFSNNPPSFKPIFQNFVSPMSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPPPKPSSSPALESTPPVESQCGSSITNLDNHGSTHLVKSEDAADLGETKLRQDNGGIVGPKNGPFANKTCASSVQERTAKLKSSIPELKKKAKDFNSKTVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEEHSTPPPNIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFIEEPGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFPRLVRVRKDKNPEEASSSEQVADMYNAQKHNHQNNQDDNEDD 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16542578 16551541 + Lsi10G012270.1 Lsi10g01227 672784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01227 804 Pfam ATP dependent DNA ligase domain 432 636 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lsi10g01227 804 PANTHER DNA LIGASE 1 92 804 - -
Lsi10g01227 804 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 173 423 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lsi10g01227 804 Gene3D - 442 640 - -
Lsi10g01227 804 Pfam ATP dependent DNA ligase C terminal region 661 772 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lsi10g01227 804 SUPERFAMILY Nucleic acid-binding proteins 644 790 IPR012340 -
Lsi10g01227 804 MobiDBLite consensus disorder prediction 60 116 - -
Lsi10g01227 804 CDD OBF_DNA_ligase_I 644 789 - -
Lsi10g01227 804 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 92 804 - -
Lsi10g01227 804 CDD Adenylation_DNA_ligase_I_Euk 421 639 - -
Lsi10g01227 804 ProSitePatterns ATP-dependent DNA ligase signature 2. 610 636 IPR016059 GO:0003909
Lsi10g01227 804 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 424 642 - -
Lsi10g01227 804 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 456 464 IPR016059 GO:0003909
Lsi10g01227 804 Gene3D DNA ligase/mRNA capping enzyme 461 586 - -
Lsi10g01227 804 Gene3D - 641 803 IPR012340 -
Lsi10g01227 804 ProSiteProfiles ATP-dependent DNA ligase family profile. 538 674 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lsi10g01227 804 MobiDBLite consensus disorder prediction 770 804 - -
Lsi10g01227 804 MobiDBLite consensus disorder prediction 91 113 - -
Lsi10g01227 804 MobiDBLite consensus disorder prediction 779 794 - -
Lsi10g01227 804 Pfam DNA ligase N terminus 190 365 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lsi10g01227 804 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 248 787 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lsi10g01227 804 Gene3D - 167 434 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00935 Lsi-Chr7:11499600 Lsi10g01227 Lsi-Chr10:16542578 3.69E-129 dispersed
Lsi10g01227 Lsi-Chr10:16542578 Lsi11g00795 Lsi-Chr11:9311275 2.42E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01227 K10747 - csv:101213447 1469.91