Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01227 | ATGCTTTCACTGCGTTCATGTTACTATCTACGGCCCATCACATTGCCTCATCCCCAATTCAAGAAACTCATCTTCTCCAACAACCCTCCCTCTTTCAAACCCATTTTTCAGAATTTTGTTTCACCAATGTCTTCTCGTCCTTCCGCGTTCGATGCTCTCATGTCTGGTGCTCGGGCCGCTGCCAAGAAGAAGCCTGTTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCTTTAGACCCTCCTCCGAAACCTAGCTCTTCCCCTGCTCTGGAGTCAACGCCGCCTGTTGAATCGCAGTGCGGCAGTTCAATCACAAATTTAGACAATCATGGAAGTACTCATCTGGTAAAGTCCGAGGACGCTGCAGATTTGGGGGAAACCAAGTTGCGTCAGGATAATGGTGGCATTGTTGGACCCAAGAATGGGCCGTTTGCGAACAAGACGTGTGCGTCTAGTGTTCAAGAAAGAACTGCGAAATTGAAGAGCTCTATTCCAGAATTGAAAAAGAAGGCCAAGGATTTCAACTCGAAGACTGTTGCATGTTGGAAAGAGGGCGAACGGGTTCCATTTTTGTTTCTGTGTTTGGGTTTCGATATGATTTCGGAGGAGTCTAGTAGGATTACTATCACCGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCAGCTCATGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAACAGTACAAGGAATTGGGAGATTTAGGTCTTGTTGCTAAAGCGAGCCGTTCATCTCAATCTATGATGCGAAAGCCCGATGCGTTAACTATTACCAAAGTATTTGACACATTTCGGCTGATTGCTAAGGAATCTGGCAAAGATAGTCAGGAGAAGAAAAAGAACCATATCAAGTCACTGCTTGTTGCTGCCACTGATTGCGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGGCAAGCAGCTGTATATGCTGAAGAACACTCAACACCACCACCGAATATTCAATCTCCTCTAGAAGAGGCTTCTAAGATTGTAAAGCAGGTGTATTCTATACTCCCAGTTTATGATAAACTTGTCCCTGCTCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAACATGCAACTTTACACCGGGAATTCCAATTGGACCTATGCTGGCAAAACCAACAAAAGGAGTGTCTGAGATCTTAAATAAATTCCAGGGTATGGAATTTACTTGTGAATACAAATATGATGGGGAACGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGGAACACTGGAAAGTTCCCTGATGTTGTTCTCACGGTATCAAGGATAAAGAAACCATCTGTAAGATCATTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAAAAGATTCTGCCTTTTCAGATTCTGAGTACTCGAGCTCGTAAGAATGTGGCCGTGAGTGATATTAAGGTTGAAGTGTGTGTCTTTGCTTTTGATTTACTGTATCTTGATGGTCAACCACTTATCCAGAGAGAACTTAATGTTCGTCGAGAGCTTCTCTACGATTCATTTATTGAAGAACCTGGATATTTTCAATTTGCCACAGCCATAATAACAAATGATCTTGAGGAAATACAAAAGTTCCTTGATGCATCGGTTGATCAAAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGGGATGCTACTTATGAGCCTTCCAAGAGGTCACATAACTGGCTAAAACTGAAGAAGGATTACATAGACAACATAGGGGATTCGCTTGATCTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTTCTTGCCTGTTATGATAACGACAATGAAGAATTTCAAAGCATTTGTAAGATAGGAACTGGGTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATTCCTGAACCAAAGTCATATTATCGGTATGGAGATACAATCAATCCAGATGTTTGGTTTGAGCCTACTGAGGTTTGGGAGGTTAAAGCAGCAGACTTGACTATTAGCCCAGTTCATCGTGCAGGAGTCGGCATTGTGGATTCTGACAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAAAATCCAGAAGAAGCCTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAAAACAATCAAGATGACAATGAAGACGACTAA | 2415 | 42.94 | MLSLRSCYYLRPITLPHPQFKKLIFSNNPPSFKPIFQNFVSPMSSRPSAFDALMSGARAAAKKKPVNSSPKKRKALDSLDPPPKPSSSPALESTPPVESQCGSSITNLDNHGSTHLVKSEDAADLGETKLRQDNGGIVGPKNGPFANKTCASSVQERTAKLKSSIPELKKKAKDFNSKTVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTITKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEEHSTPPPNIQSPLEEASKIVKQVYSILPVYDKLVPALLSGGVWNLSKTCNFTPGIPIGPMLAKPTKGVSEILNKFQGMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNVRRELLYDSFIEEPGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKSYYRYGDTINPDVWFEPTEVWEVKAADLTISPVHRAGVGIVDSDKGISLRFPRLVRVRKDKNPEEASSSEQVADMYNAQKHNHQNNQDDNEDD | 804 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 16542578 | 16551541 | + | Lsi10G012270.1 | Lsi10g01227 | 672784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01227 | 804 | Pfam | ATP dependent DNA ligase domain | 432 | 636 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Lsi10g01227 | 804 | PANTHER | DNA LIGASE 1 | 92 | 804 | - | - | |
Lsi10g01227 | 804 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 173 | 423 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Lsi10g01227 | 804 | Gene3D | - | 442 | 640 | - | - | |
Lsi10g01227 | 804 | Pfam | ATP dependent DNA ligase C terminal region | 661 | 772 | IPR012309 | GO:0003910|GO:0006281|GO:0006310 | |
Lsi10g01227 | 804 | SUPERFAMILY | Nucleic acid-binding proteins | 644 | 790 | IPR012340 | - | |
Lsi10g01227 | 804 | MobiDBLite | consensus disorder prediction | 60 | 116 | - | - | |
Lsi10g01227 | 804 | CDD | OBF_DNA_ligase_I | 644 | 789 | - | - | |
Lsi10g01227 | 804 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 92 | 804 | - | - | |
Lsi10g01227 | 804 | CDD | Adenylation_DNA_ligase_I_Euk | 421 | 639 | - | - | |
Lsi10g01227 | 804 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 610 | 636 | IPR016059 | GO:0003909 | |
Lsi10g01227 | 804 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 424 | 642 | - | - | |
Lsi10g01227 | 804 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 456 | 464 | IPR016059 | GO:0003909 | |
Lsi10g01227 | 804 | Gene3D | DNA ligase/mRNA capping enzyme | 461 | 586 | - | - | |
Lsi10g01227 | 804 | Gene3D | - | 641 | 803 | IPR012340 | - | |
Lsi10g01227 | 804 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 538 | 674 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Lsi10g01227 | 804 | MobiDBLite | consensus disorder prediction | 770 | 804 | - | - | |
Lsi10g01227 | 804 | MobiDBLite | consensus disorder prediction | 91 | 113 | - | - | |
Lsi10g01227 | 804 | MobiDBLite | consensus disorder prediction | 779 | 794 | - | - | |
Lsi10g01227 | 804 | Pfam | DNA ligase N terminus | 190 | 365 | IPR012308 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Lsi10g01227 | 804 | TIGRFAM | dnl1: DNA ligase I, ATP-dependent (dnl1) | 248 | 787 | IPR000977 | GO:0003910|GO:0005524|GO:0071897 | |
Lsi10g01227 | 804 | Gene3D | - | 167 | 434 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g00935 | Lsi-Chr7:11499600 | Lsi10g01227 | Lsi-Chr10:16542578 | 3.69E-129 | dispersed | |
Lsi10g01227 | Lsi-Chr10:16542578 | Lsi11g00795 | Lsi-Chr11:9311275 | 2.42E-18 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01227 | K10747 | - | csv:101213447 | 1469.91 |