Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01255 ATGAAACCCACCACTTGCACTACCAATGGCCACGTCTCCCTCGTCGATGGCCTCTGCTTGAACGATCCTTTGTACTGGGCCGCCGCCGCGGATGGCCTCAAAGGAAGCCACCTCGACGAGGTGAAGAAAATGGTGGGGGAGTACCGGCGAGGGGTGGTGCGACTCGGCGGAGAGAGCTTGACTATTGGTCAGGTGGCGGCGGTGGCGTTGCACGACGGCGGAGTGAAGGTGGAGCTGAATGAGTCGGCCAGAGAGGGAGTGAAGGCGAGTAGTGATTGGGTAATGGAGAGTATGAAGAAAGGGACGGATAGTTATGGAGTCACCACTGGATTTGGTGCAACCTCTCATCGGAGAACCAATCAAGGAGCTGCTCTGCAGAAGGAGCTTATTCGATTCTTGAACGCGGGAATATTTGGGAACGGAACAGAGTCCAACCACACACTACCTCACACTGCCACAAGGGCAGCCATGTTGGTGAGAATCAACACTCTTCTCCAAGGCTATTCCGGCATTAGATTTGAGATTTTAGAGTCAATTACGAAACTACTCAACCACAATGTCACACCTTGCCTTCCCTTACGAGGCACCATTACAGCTTCTGGTGATTTGGTTCCTTTTTCCTATATTGCCGGCTTTTTAACCGGTCGTCCCAATGCCAAGGCTGTCGGCCCAACCGGTGATCTCTTTGATGCTGAAGCAGCTTTTAAACTTGCTGGCATAGCTGGTGGATTTTTTGAGTTGCAGCCTAAAGAGGGTCTCGCACTTGTCAATGGGACGGGTGTTGGATCTGGTTTGGCATCTATTGTTTTGTTCGAGGCGAATGTATTGGCTCTTTTGTCTGAGGTCATTTCGGCAATCTTTGCTGAAGTGATGCAGGGAAAGCCTGAGTTTACTGATCATTTGACTCATAAATTGAAGCATCATCCGGGTCAAATCGAAGCTGCAGCCATAATGGAGCACCTTTTGGAAGGGAGTGCTTTCATAAAAGATGCTAAGAAGTTACATGATTTGGACCCTCTTCAAAAGCCAAAACAAGATCGTTACGCTCTTCGGACTTCACCTCAATGGTTAGGCCCTCAAATTGAAGTGATTCGACATTCGACAAAATCGATTGAGAGAGAGATCAACTCAGTGAACGACAATCCATTGATTGATGTTTCGAGGAATAAAGCTCTACATGGAGGCAATTTTCAAGGAACTCCAATCGGGGTGTCCATGGACAACACTAGATTGGCTCTTGCTTCAATTGGAAAGCTTTTGTTTGCTCAATTCTCTGAACTTGTGAATGATTTCTACAACAATGGTCTGCCTTCAAATCTCTCTGGAGGAAGTAATCCAAGCTTGGATTATGGATTTAAAGGGGCTGAAATTGCAATGGCTTCTTATTGTTCGGAACTACAGTTCTTGGCAAATCCGGTCACCAATCATGTTCAAAGTGCAGAGCAACACAACCAAGATGTGAACTCATTGGGTCTGATTTCTTCAAGAAAAACAGCTGAGGCAATAGATATCTTGAAGCTGATGAGCACAACATTCCTAGTGGCTCTCTGCCAAGCCATAGATTTGAGACACATAGAGGAGAATTTGAAGAGCACTGTGAAAAACACAGTGAGTCAAGTTGCCAAGAAGGTTTTAACGATTGGAGTAAATGGAGAGCTTCATCCATCAAGATTCTGTGAGAAAGATTTGCTGAAAGTTATTGATAGAGAATATGTTTTTGCTTACATAGACGATCCATGCAGCATGACATATCCTTTAATGCAAAAGCTGAGGCAAGTTTTTGTTGAACATGCATTAAACAATGACGATGATCTGAAGAATTCAAACTCCTCAATCTTTCTAAAGATTGGAGCTTTTGAAGAGGAACTAAAAACCCTTTTGCCCAAAGAAGTAGAAAGTGGAAGACAAGCCATTGCAAAAGGCAAACCAACAATTCCCAACAAGATAAAGGATTGTAGATCATACCCACTTTACAGATTTGTTAGAGAAGAATTGGGAACTGCTATCTTGACAGGTGAAAAAGTGAAATCCCCTGGGGAAGAATTTGACAAAGTTTTTACTGCAATTTGTGAGGGGAAAATCATTGATCCTCTGCTGGAATGCCTTGAGAGTTGGAATGGGACTCCTCTTCCTATAAATTAG 2142 44.68 MKPTTCTTNGHVSLVDGLCLNDPLYWAAAADGLKGSHLDEVKKMVGEYRRGVVRLGGESLTIGQVAAVALHDGGVKVELNESAREGVKASSDWVMESMKKGTDSYGVTTGFGATSHRRTNQGAALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILESITKLLNHNVTPCLPLRGTITASGDLVPFSYIAGFLTGRPNAKAVGPTGDLFDAEAAFKLAGIAGGFFELQPKEGLALVNGTGVGSGLASIVLFEANVLALLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHLLEGSAFIKDAKKLHDLDPLQKPKQDRYALRTSPQWLGPQIEVIRHSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSGGSNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSTTFLVALCQAIDLRHIEENLKSTVKNTVSQVAKKVLTIGVNGELHPSRFCEKDLLKVIDREYVFAYIDDPCSMTYPLMQKLRQVFVEHALNNDDDLKNSNSSIFLKIGAFEEELKTLLPKEVESGRQAIAKGKPTIPNKIKDCRSYPLYRFVREELGTAILTGEKVKSPGEEFDKVFTAICEGKIIDPLLECLESWNGTPLPIN 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16767733 16772905 - Lsi10G012550.1 Lsi10g01255 672812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01255 713 CDD PAL-HAL 58 523 IPR001106 -
Lsi10g01255 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 22 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lsi10g01255 713 Gene3D Fumarase/aspartase (Central domain) 261 707 - -
Lsi10g01255 713 PANTHER AMMONIA-LYASE, PUTATIVE-RELATED 4 713 - -
Lsi10g01255 713 Gene3D - 526 647 IPR023144 -
Lsi10g01255 713 SUPERFAMILY L-aspartase-like 22 712 IPR008948 GO:0003824
Lsi10g01255 713 Pfam Aromatic amino acid lyase 60 535 IPR001106 -
Lsi10g01255 713 PANTHER HISTIDINE AMMONIA-LYASE 4 713 IPR001106 -
Lsi10g01255 713 Gene3D - 16 259 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01255 Lsi-Chr10:16767733 Lsi01g01331 Lsi-Chr1:11504847 0 dispersed
Lsi01g01328 Lsi-Chr1:11489995 Lsi10g01255 Lsi-Chr10:16767733 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01255 K10775 - csv:101218156 1356.27