Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01256 ATGGCAAACAAATGGAAGAAGGTGAAGATGGCTATTGGGAATGGTATGTGTCTTCATCTTCCTCAAGTCGTTGGGGATTCGACACACTCTAATACCTTTCCCACAACTTCCTCCTCTCAATCCCTTTCTCCTTTGCCTCCTACTTCCAATTGCCGCCAATCCACGCCGACCCATTCCTTCTCTACTCCCCGCGTTTCCAAATCCGGATCAAGATTTCAAGAAAATTTCAAGAGTGTTTCTGTAATTCCCATTAGCCTTTTAATCGCCCCCTTTTTCTTTTTCAGCTCTTTCATAATGTTTATTGTGGGTGGCTATGTGTACCGTAGGCGGCTTGGACTTAGTTCGGCGTATACTAAGCTGGTCAATGAACACTTGGTTCTTTCCAACGTAATCTGTAAAGAAAATCTGATCATATTAGGCAGTGTTTTTGTGTTAGTAATGAAGACCTGTGCAATATGCTTGACCACCATGAAAGCAGGGAATGGCCATGCTATTTTCACTGCAGAATGCTCTCATTCTTTCCACTTCCAATGCATTACCTCAAATGTAAAGCATGGGAATCAAATTTGCCCTGTTTGCAGAGCTAAATGGAAAGAAATCCCTTTTCAGAATACCAGTTCTGATTGTGCTAGGCCCCGAACCAACCCGGTTGGGTTGGCCCCAGACGATCCATGGATGACCATTGTTCGACGGATGCCTTCTCCTCGCTCCAATACAACTAGGCAAATCTCCTCGCTTTTTCATGGCCCTGAACCAGTAGCTTATGATGATGATGAAGTTTTAGATCAACAACCTCATGCCACCGAGAGAAACACATCAAATGATGGTGCCAGTGTTCATAGTTGTGCTGATAAAGTAGAGGTCAAAACGTACCCAGAAATTTCAGCTGTTCCAAGATCAGTTTCTCGTGATCATTTCTCCGTGTCAGTCCATGTCAAGGCTCCTCTCTCCATTGCAACAGTAAATAACTCCAGAAACCAGGCTGCATTGCCTTCATTGAATCAGCCTTCTCGTGCACCAGTTGACCTTGTTACCGTGCTTGATGTTAGCGGCAGTATGGCAGGTACCAAACTTGCCCTGCTCAAACGTGCTATGGGCTTTGTGATCCAGAATCTCGGCCCTTCTGATCGACTTTCTGTCGTATCATTCTCCTCTACTGCTCGTCGCCTTTTCCCGCTTTGTCGAATGACTGACCATGGACGCCGGCAAGCATTGCAGGCTGTTAATTCTCTAAAATCAAACGGTGGGACAAACATTGCTGAAGGCTTGAGGAAAGGTGCCAAGGTGTTGGTCGACCGCAAGTTGAAGAACCCTGTTGCTAGCATTATACTGCTCTCTGATGGGCAGGATACATATACTTTTAATGGTCCTAGCAGTGCTCGTCCTCTAATAGATTATCACTCCCTCCTTCCAGTTTCAATCCATCGCAATAACCCATCTGGAATGCCGCAGATTCCCGTCCATACATTTGGATTCGGCGCCGACCACGACGCCGTGACAATGCACACGATGTCCGACTCATCTGGTGGCACATTTTCGTTCATAGAAACCGAAAGCACAATCCAGGATGCATTCGCGCAGTGCATTGGTGGTCTCTTGAGCGTGGTGGTTCAGGATCTGCAAGTTGAAGTCAGATGCATTCACCCAAGTCTGGAGCTTGGTTCAATACAAGCAGGAAGTTACCAAACCAGCATCACAGAACGTGCAAGACTAGGCTCCATTTACTTTGGAGACTTGTATGCAGAAGAAGAGAGGGACTTTCTAGTGACACTCAACATTCCAGTTGATGAATTCGGAGGTGAGATGCCATTGCTCAAGGTTAAATGGGTTTACAAGGACCCTATTACCAAAGAGCCAATCACTTTAGCAAATGAAACTGAGGTTCAAATACAGAGGCCAGACAGAGTAGGTGAACAAGTAGTGTCATTGGAAGTAGACAGGCAGCGAAATAGATTCCGAGCGGCAGAGGCAATGTCAGAGGCCAGAGTTGCTGCCGAGCGTGGTGATTTAGCCGGTGCAGTGTCTGTTTTGGACAAATGTTACAAAACTGTGTCTGAATCTGCATCTGCTCGAGCTGGTGACCAATTATGTGCTGCTCTTTGTGCTGAGCTGAAGGAAATGCAGGAGAGAATGGCAACTCGCCATATCTACGAGTCCTCGGGACGAGCTTATGTGCTGTCAGGATTGAGCTCGCATTCATGGCAGAGAGCAACTGCGAGAGGGGATTCAGTTGACATGGGAAGCGCAGTGCAGAGTTATCAAACGCAGTCAATGGTGGACATGGTGTCTCGTTCTCAGACCATGATAATGGGACCGCCACCGTCTCAAAGAACACTTCGTCCCACTAATTCTTTTCCGAATCGGAACCTTGTAATCAGTTTATCCCCGAAGATTGAAGAGCTTCTACTTGGTGGGTACTGGCTTTACTTGTATGTTACTTGGTTGGAGGAAGCTGGATTCTCCTTCCAGGGCTATATTTTGGCTATATCTGAACGTCCATTGTTTGGACGCTCCAGATTATTCCGATCAATAGTGATCGATGCACGATTGTTGTCCACATTAGCGAGGGACCGCAATTTAGCGGTCTACATAGCCGACACAAGGTTGGTGGGGATGTGGGACTCATATCGGTCCCTTTCGGATTCGCAAATGGGTCACTTTCAGAGTGGTGGTCGATGGGCTCTGTTCTGTTCTGTTTTCAGCCTGATTCCAATTCTGAATATATCCGAACCATTAGCGTCGGCGTGCTCAATCCACTGTTTTGATTATCTGGAACTGATCGAAGGAGAATTTTCAGTGGCAGTAACCTCTATTGTGTTACTGCCTATATATCTTAGTAGTTTCTCTTTTTGGATGACTATGAAATTCATATATTATTATGTCGGACTCAGAAAAAGGTCTAGACTGCTTCCGGAGTCACCATCTTCTAAAAGGCACATTTCAAGCAACGTGGTTGTGATTATTCTCTCACTATGTGTAATAATCATAACATTAGCCTTCTTCATCTTAGTGGTTTGCTATCTTTGTCAAAGGGGCAAGTACCGTGTTCGAACTCCAATATTTTCATTAGATAAGCAAATGAGCTACAACAGCTTGACCAACCTAATTAGTCACAAGAGTTCTTCAACACCGGATAGTAAGGTTATGATGGATTCCCCTGTGAATAACATCAAAGGATGCTTTTTCATGAACCAATGCTTGTTGAGGACTAAATCTTGGAGTATGTGTGGGATCATCATCCAATTCTCATACTCAGAGTTGGAAAATGCAACAAATAAGTTTTCAAGCACCCATCTTGTGGGACGTGGGGGAAGTAGCTTTGTTTATCGTGGTGAGTTGAAGGACGGTAGAACAGTGGCTGTAAAGCGGCTCAATATTCAAGGAGGACCGGATGTGGACTACTTGTTCTTAACAGAAATACAATTGTTATCAAGGCTTCATCATTGCCACGTGGTGCCTCTACTTGGTTATTGCACAGAATCAAAGGGGAAACATACTGAAAGGATTTTGGTATATGAATACATGCCAAAGGGTAATCTAAGAGACTGTTTGGATGATGCTTCAGGGGAGAAAATGGATTGGGGTACTCGTGTTACAATTGCTTTAGGAGCTGCAAGAGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCCAGAATTTTGCATAGAGATGTCAAGTCAACAAATATTCTTTTGGATAAAGATTGGAGAGCAAAAATAACAGACCTTGGTATGGCTACAAGGTTAAGAGGTGACGATCTTCCTAGCTGTTCCAGTTCTCCTGCTAGAATGCAGGGGACTTTTGGGTATTTTGCACCGGAGTATGCAATTGTTGGAAGAGCCTCTTTGAAGTCTGATGTCTTCAGTTTTGGAGTAGTTCTTCTTGAGCTTATAACGGGTCAGCATCCCATCCATAAATCAGCAAACAAAGGAGAGGAAAGCCTTGCAATATGGGCTGCTCCCCGGTTGCAAAATAGTAGGCGAGTCATAACGGAGTTGCCTGACCCAAATTTAGATGGAATGTTCCCGGAGGAAGAGATGCAAATAATGGCTTATTTAGCAAAGGAGTGCTTGCTGTTGGATCCTGATGCTAGACCTACCATGACTGAAGTTGTTCAAGTTCTTTCAAATATAACTCCAGATAAATCAAGAAGGAATAACATTTCTGCAAACGTTTTTCAGGTAAGTCATGAGAGGCTGTCAGCCTGTAGTGTGGAGAGTGAACCAGACATCGTAAATGACAACATAAATCCTATAGGGAAACAAGTCCATACAGAGGTGATTTGCATCGATGATGTGATGGGAAGGCAAGCTTCATCCCGCAAATGGCTCGATCGCTATTCACTACCATTGGATATTGATCGTTCACTTTGTGTTGGCAACTATGACAACCAAGATATTGTTTCTTTTGAGCACATGGAAAAACTCGTACCCTTGACTTTAAAGGGCAGCAATCTCCAAGTCCAAGCCCCAGATGATGAAACAGTAGACTTGACTGAACCTCGGTTCGAGTCATTCTGCATTGTGAATGTCAAATCATCCTCATAG 4545 44.6 MANKWKKVKMAIGNGMCLHLPQVVGDSTHSNTFPTTSSSQSLSPLPPTSNCRQSTPTHSFSTPRVSKSGSRFQENFKSVSVIPISLLIAPFFFFSSFIMFIVGGYVYRRRLGLSSAYTKLVNEHLVLSNVICKENLIILGSVFVLVMKTCAICLTTMKAGNGHAIFTAECSHSFHFQCITSNVKHGNQICPVCRAKWKEIPFQNTSSDCARPRTNPVGLAPDDPWMTIVRRMPSPRSNTTRQISSLFHGPEPVAYDDDEVLDQQPHATERNTSNDGASVHSCADKVEVKTYPEISAVPRSVSRDHFSVSVHVKAPLSIATVNNSRNQAALPSLNQPSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVVSFSSTARRLFPLCRMTDHGRRQALQAVNSLKSNGGTNIAEGLRKGAKVLVDRKLKNPVASIILLSDGQDTYTFNGPSSARPLIDYHSLLPVSIHRNNPSGMPQIPVHTFGFGADHDAVTMHTMSDSSGGTFSFIETESTIQDAFAQCIGGLLSVVVQDLQVEVRCIHPSLELGSIQAGSYQTSITERARLGSIYFGDLYAEEERDFLVTLNIPVDEFGGEMPLLKVKWVYKDPITKEPITLANETEVQIQRPDRVGEQVVSLEVDRQRNRFRAAEAMSEARVAAERGDLAGAVSVLDKCYKTVSESASARAGDQLCAALCAELKEMQERMATRHIYESSGRAYVLSGLSSHSWQRATARGDSVDMGSAVQSYQTQSMVDMVSRSQTMIMGPPPSQRTLRPTNSFPNRNLVISLSPKIEELLLGGYWLYLYVTWLEEAGFSFQGYILAISERPLFGRSRLFRSIVIDARLLSTLARDRNLAVYIADTRLVGMWDSYRSLSDSQMGHFQSGGRWALFCSVFSLIPILNISEPLASACSIHCFDYLELIEGEFSVAVTSIVLLPIYLSSFSFWMTMKFIYYYVGLRKRSRLLPESPSSKRHISSNVVVIILSLCVIIITLAFFILVVCYLCQRGKYRVRTPIFSLDKQMSYNSLTNLISHKSSSTPDSKVMMDSPVNNIKGCFFMNQCLLRTKSWSMCGIIIQFSYSELENATNKFSSTHLVGRGGSSFVYRGELKDGRTVAVKRLNIQGGPDVDYLFLTEIQLLSRLHHCHVVPLLGYCTESKGKHTERILVYEYMPKGNLRDCLDDASGEKMDWGTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKDWRAKITDLGMATRLRGDDLPSCSSSPARMQGTFGYFAPEYAIVGRASLKSDVFSFGVVLLELITGQHPIHKSANKGEESLAIWAAPRLQNSRRVITELPDPNLDGMFPEEEMQIMAYLAKECLLLDPDARPTMTEVVQVLSNITPDKSRRNNISANVFQVSHERLSACSVESEPDIVNDNINPIGKQVHTEVICIDDVMGRQASSRKWLDRYSLPLDIDRSLCVGNYDNQDIVSFEHMEKLVPLTLKGSNLQVQAPDDETVDLTEPRFESFCIVNVKSSS 1514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16795701 16811495 + Lsi10G012560.1 Lsi10g01256 672813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01256 1514 MobiDBLite consensus disorder prediction 29 68 - -
Lsi10g01256 1514 Pfam Protein kinase domain 1096 1372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01256 1514 ProSiteProfiles Zinc finger RING-type profile. 150 194 IPR001841 -
Lsi10g01256 1514 SMART ring_2 150 193 IPR001841 -
Lsi10g01256 1514 Gene3D Phosphorylase Kinase; domain 1 1069 1174 - -
Lsi10g01256 1514 Pfam RING-like zinc finger 150 179 IPR001841 -
Lsi10g01256 1514 Gene3D Transferase(Phosphotransferase) domain 1 1175 1400 - -
Lsi10g01256 1514 CDD STKc_IRAK 1100 1377 - -
Lsi10g01256 1514 Coils Coil 1507 1514 - -
Lsi10g01256 1514 SUPERFAMILY vWA-like 338 529 IPR036465 -
Lsi10g01256 1514 ProSitePatterns Protein kinases ATP-binding region signature. 1100 1122 IPR017441 GO:0005524
Lsi10g01256 1514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 287 IPR013083 -
Lsi10g01256 1514 ProSiteProfiles VWFA domain profile. 342 529 IPR002035 -
Lsi10g01256 1514 CDD vWA_C3HC4_type 341 516 - -
Lsi10g01256 1514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1219 1231 IPR008271 GO:0004672|GO:0006468
Lsi10g01256 1514 CDD RING-H2 150 194 - -
Lsi10g01256 1514 SMART VWA_4 340 525 IPR002035 -
Lsi10g01256 1514 Pfam VWA / Hh protein intein-like 694 767 IPR032838 -
Lsi10g01256 1514 SMART serkin_6 1094 1374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01256 1514 SUPERFAMILY Protein kinase-like (PK-like) 1074 1374 IPR011009 -
Lsi10g01256 1514 PANTHER RETROELEMENT POL POLYPROTEIN-LIKE 3 789 - -
Lsi10g01256 1514 Pfam von Willebrand factor type A domain 342 526 IPR002035 -
Lsi10g01256 1514 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 789 - -
Lsi10g01256 1514 Gene3D von Willebrand factor, type A domain 342 530 IPR036465 -
Lsi10g01256 1514 ProSiteProfiles Protein kinase domain profile. 1094 1377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01256 1514 SUPERFAMILY RING/U-box 149 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00717 Lsi-Chr8:15516122 Lsi10g01256 Lsi-Chr10:16795701 0 dispersed
Lsi10g01256 Lsi-Chr10:16795701 Lsi03g01118 Lsi-Chr3:21364216 1.79E-67 dispersed
Lsi01g00518 Lsi-Chr1:4232609 Lsi10g01256 Lsi-Chr10:16795701 4.54E-38 transposed
Lsi08g01049 Lsi-Chr8:19098073 Lsi10g01256 Lsi-Chr10:16795701 3.08E-88 transposed
Lsi10g01256 Lsi-Chr10:16795701 Lsi03g00032 Lsi-Chr3:638765 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83978 PF00069 Pkinase 8.40E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01256 - - csv:101217919 1176.77