Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01258 ATGAGACCCATTCTCTGTTTTGGACTGCCTCTCCGTCTCTCTCGTTCCGTCTCTTTCACAGACTCATGGAAGCGCTTCTTCTTGCCCATTTCCCCATTTCATTCAAATTCTGAGTTTCAAGTCCTCATTTCGGCGACAAGAACAACAACTCCTTCTCTTCATGCTCTGAAACAGCGTCTGAAAGAAGCAAAGTTAACTCCATTAGAACTGCAGCCCAAGTTTTCATTTGGGAAGATCTTTATGGCTTATGGTAGTTCTAGATCCGTAAGGTTCCAAGACGATCTTGAATCGTCTGCCCTGCCTACTATCAATGGTGGCGGTGTGACAAAGATCATATACAACATTGATGGCACACAAATACCGGAATCGAGCGGCAAGAGAACTGCGGCTTCTAGGAAGTCTGGAAGATCCCTGAGAGCTAAAGTTTTGTCTAGAGTTTTCTCAGAGGATTATGAGAGAGTACAAAGAAAAATATTGGATCCTAGGGGACAAGTCATAAGGCGATGGAATAAGATATTTTTAGTTGCTTGTTTAGTCTCTTTGTTTGTAGACCCTCTTTTCTTTTACTTGCCTGTGGTCAAGGATGAGGTATGCATCGATATAGGAGTAGGTCTTGAAGTCGTCCTCACAACTATACGATCAATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTCCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGATCCTTTTAAGATAGCAATAAGGTATCTACGCTATGGTTTCTGGATTGATCTCATTGCAGCCGTGCCAGTTCCCCAGGTACTGATCTGGATTGTCATCCCCAACCTTAGTGGTTCAACAATGACAAACACCAAGAACTTCCTAAGGTTCTTTCTCATATTCCAGTACCTCCCAAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGCTGGAGAAGACTTTGTATGTTTGACAAATCTTGTAAAGATGGATTCTTCGACTGTCATAAGGTCGATGACCCTCAAAGGGACTCGTGGTTTAATACGAGCAAAATTAAAAGCTCATGCAATCCAAATGGTTCCTTTTATCAATTTGGTATATATGGTGATGCAATAACTTTCCATGTCACAACCTCACCATTTTTCAACAATTCCTTGGGACAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATAATTTTTGCCATTATTGTGGCAACTCTTGGGCTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATACCTCCAATCGACAACCGTTCGATTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAGCTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGAGGAGTCGATGAAGAAGTGCTGCTTAGAAGCCTTCCCTTGGATCTCCGGAGAGACATAAAACGTCACCTTTGCCTTGACCTTGTTCGAAGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTAGATGCAATATGCGAAAGACTTAAACCTGCCTTGAGCACAGAAGGCACATATCTCGTGCGAGAAGGCGACCCAGTCAATGAAATGTTATTCATAATCAGAGGTCATCTGGACTCATACACCACCAATGGTGGTAGAACTGGTTTTTTCAACTCCTGTCGTATTGGCCCAGGTGATTTCTGTGGCGAGGAGCTGCTGACTTGGGCTCTCGACCCTCGTCCAAGTGTTGTACTTCCTTCTTCCACTCGCACGGTCAAAGCCATCTCTGAGGTAGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAGCAACTGAGACACAAGTTTCGATTCTACTCGCATCAATGGCGAACATGGGCTGCATGTTTTGTTCAAGCAGCATGGCGGAGATATAAGAGACGCAAAGAGCGAGCTGACCTCAGGGCTAGAGAGAGCTATCCAGCTACCAAAGTCGAGTCTCCGCTTTCACCACCACTGACATCAAACTTGGATTCCCATTCAGGAAATATTAGAAGGGGATTGAATAAGCGTTGTGTGTCGGATGCTGGGGTCGTAAGCTCGTTGCAGAAGCCAGAAGAGCCTGACTTCTCCATTGTTGAGGAATAA 2304 43.88 MRPILCFGLPLRLSRSVSFTDSWKRFFLPISPFHSNSEFQVLISATRTTTPSLHALKQRLKEAKLTPLELQPKFSFGKIFMAYGSSRSVRFQDDLESSALPTINGGGVTKIIYNIDGTQIPESSGKRTAASRKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLVSLFVDPLFFYLPVVKDEVCIDIGVGLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVFGRGELVIDPFKIAIRYLRYGFWIDLIAAVPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRLCMFDKSCKDGFFDCHKVDDPQRDSWFNTSKIKSSCNPNGSFYQFGIYGDAITFHVTTSPFFNNSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEVLLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERADLRARESYPATKVESPLSPPLTSNLDSHSGNIRRGLNKRCVSDAGVVSSLQKPEEPDFSIVEE 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16827240 16831957 + Lsi10G012580.1 Lsi10g01258 672815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01258 767 PANTHER - 86 766 - -
Lsi10g01258 767 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 86 766 - -
Lsi10g01258 767 SMART cnmp_10 547 678 IPR000595 -
Lsi10g01258 767 Pfam Ion transport protein 169 474 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi10g01258 767 CDD CAP_ED 547 678 IPR000595 -
Lsi10g01258 767 Pfam Cyclic nucleotide-binding domain 570 656 IPR000595 -
Lsi10g01258 767 SUPERFAMILY Voltage-gated potassium channels 160 469 - -
Lsi10g01258 767 Gene3D Helix hairpin bin 474 538 - -
Lsi10g01258 767 MobiDBLite consensus disorder prediction 708 733 - -
Lsi10g01258 767 Gene3D - 168 471 - -
Lsi10g01258 767 ProSiteProfiles cAMP/cGMP binding motif profile. 547 644 IPR000595 -
Lsi10g01258 767 Gene3D Jelly Rolls 545 665 IPR014710 -
Lsi10g01258 767 SUPERFAMILY cAMP-binding domain-like 477 672 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01343 Lsi-Chr1:11630738 Lsi10g01258 Lsi-Chr10:16827240 4.58E-22 dispersed
Lsi02g00025 Lsi-Chr2:304537 Lsi10g01258 Lsi-Chr10:16827240 1.81E-112 dispersed
Lsi10g01258 Lsi-Chr10:16827240 Lsi11g00684 Lsi-Chr11:7207436 0 dispersed
Lsi11g01395 Lsi-Chr11:22488055 Lsi10g01258 Lsi-Chr10:16827240 3.46E-90 dispersed
Lsi10g01258 Lsi-Chr10:16827240 Lsi03g01408 Lsi-Chr3:25030619 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01258 K05391 - csv:101210775 1334.7