Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01262 ATGAAAGAAGCAGAGAAAAATTTAGATCCTCAACTATGGCATGCCTGTGCCGGAGGCATGGTCCAGATGCCTGCGATTAACTCCAAGGTTTTTTACTTCCCTCAGGGTCACGCCGAACACGCTCAGGCCACCGTCGATTTCACCTCTTCACTCAGAATCCCGCCTCTTATTCCTTGTCGAGTGCTCGCCGTCAAGTTCTTGGCTGACCATGAAACGGATGAGGTTTTTGCGAATGTAAGAATGGTTCCACTGCCGAATAACGACCTTAATTTCGAAGAAGAGGGGGGTTTTGGGAGTAATGGGTCTGAGAATAATATGGAGAAACCGGCTTCTTTTGCCAAGACGTTGACTCAATCCGATGCCAACAACGGCGGTGGGTTTTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGCGGCTGGATTACACGGCGGATCCACCGGTTCAGACGGTGATTGCCAAGGATGTTCACGGCGAGGTTTGGAAGTTCCGCCATATTTACAGGGGGACGCCTCGCCGGCATTTGTTGACTACTGGGTGGAGTACTTTTGTGAATCAGAAGAAGCTCGTCGCCGGCGATTCGATTGTTTTTCTGAGATCCAAAAATGGCGACCTCTGTGTCGGAATCCGGCGAGCCAAACGCGCAATTGGGTGTGCCGCCGATCACCCGTACGGATGGAATCCCGGCGGCGGAAACTGCATCCCACCTTACGGTGGATTGACGATGTTTTTGAGAGATGAGGACAACAAGTTGAGTAGAAAAGGGTCTTTAAGTTCCAGTGGTGGTGGTGGGAATTTGAGGGGAAAAGGTAAAGTGAGGCCGGAATCAGTGATGGAAGCGGCGGCGCTTGCGGCGAGTGGGCAGCCGTTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCGGAGTTCTGTGTTAAAGCCTCATCGGTGCGAGCCGCCATGAGGATCCAATGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGTTGGCCTAATTCTCCATGGCGGCTTCTTCAGGTGACATGGGATGAACCAGATTTGCTACAGAATGTGAAGCGTGTTAGCCCATGGTTAGTTGAACTGGTATCGAACATGCCTGTCATTCAACTATCACCATTTTCTCCACCGAGAAAGAAGTTTCGACTACCACAACACCCAGACTTTCCCCTCGACAGCCAATTCCCACTGTCGTCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTATCAGATTTCCATCTCAACAACAAACTGCAATTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCTAGAATTTCCAACAGATCAGTTACCGACCACAGAGACAGCAGCAGTCAGAACTCATCGGTGTTGCTAAATGGGGAAAAGACTGGTCCAAAGTTGGAAAGATCCGATTCAGTGAAGAAGCATCAGTTTTTACTCTTTGGTCAACCTATATTGACTGAACAACAAATCACTTGCAGCTCTTCCAGTGACATTCGTTCACCTCGAACGGAGAAAAGCTCCTTGGATGTGAATCTGGAGAGAGTGAAGTTTCTTTCCGATGGCTCAGGATCCACTTTCAAGCAGCAAATTTCTCCAAACAAGTCACCAGGAGTAGGATTTCCATGGTACCAAGGTTATCAAGCCACTGAACTCGGCCTAGACATCGGTCACTGTAAGGTATTTATGGAGTCAGAAGACGTGGGCCGGACACTAAACCTTTCAGTAATCGGCTCATATGAAGAACTATACAGGAGGCTCGCGAATATGTTCGGAATGGAAAAACCAGACATTCTTAGCCATGTACTGTACCAAGATGCAACAGGTGCTGTGAAACAAGCTGGAGATAAACCATTCAGTGATTTCATCAAAACAGCTAGAAGACTGACGATACTAACGGACTCGGGTTCCGACAAGCTGGGAAGGACATTGATGGATGGAATGAGAAGCGGTGAAAATGGATTAGATGCTTCAAACAAGACTGGCCCCTTGAGCATATTTGCCTAG 2148 48.28 MKEAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADHETDEVFANVRMVPLPNNDLNFEEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGNCIPPYGGLTMFLRDEDNKLSRKGSLSSSGGGGNLRGKGKVRPESVMEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPLSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQLDFHSRISNRSVTDHRDSSSQNSSVLLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSSDIRSPRTEKSSLDVNLERVKFLSDGSGSTFKQQISPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKLGRTLMDGMRSGENGLDASNKTGPLSIFA 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16880026 16884130 + Lsi10G012620.1 Lsi10g01262 672819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01262 715 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi10g01262 715 PANTHER AUXIN RESPONSE FACTOR 2 692 - -
Lsi10g01262 715 MobiDBLite consensus disorder prediction 252 272 - -
Lsi10g01262 715 MobiDBLite consensus disorder prediction 492 507 - -
Lsi10g01262 715 SMART B3_2 112 214 IPR003340 GO:0003677
Lsi10g01262 715 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 692 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi10g01262 715 ProSiteProfiles PB1 domain profile. 603 683 IPR000270 GO:0005515
Lsi10g01262 715 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Lsi10g01262 715 Gene3D - 603 688 - -
Lsi10g01262 715 CDD B3_DNA 111 212 IPR003340 GO:0003677
Lsi10g01262 715 Gene3D - 110 214 IPR015300 -
Lsi10g01262 715 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Lsi10g01262 715 Gene3D - 319 392 - -
Lsi10g01262 715 SUPERFAMILY DNA-binding pseudobarrel domain 107 216 IPR015300 -
Lsi10g01262 715 MobiDBLite consensus disorder prediction 488 517 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00720 Lsi-Chr8:15567962 Lsi10g01262 Lsi-Chr10:16880026 0 dispersed
Lsi08g00944 Lsi-Chr8:17909532 Lsi10g01262 Lsi-Chr10:16880026 5.18E-06 dispersed
Lsi10g01262 Lsi-Chr10:16880026 Lsi06g01682 Lsi-Chr6:27009010 1.80E-73 dispersed
Lsi01g01337 Lsi-Chr1:11579871 Lsi10g01262 Lsi-Chr10:16880026 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26078 PF02362 B3 1.40E-21 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01262 - - bhj:120088819 1394.02