Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01265 ATGGCCATGGCTATAGCTCATCATAGAGAGAGTAGTAGTGGGAGTATAACCAGGCATCTTGACAGTTCTGGGAAGTACGTTCGATACACAGCAGAGCAGGTGGAGGCTCTTGAGCGAGTCTATGCTGAGTGCCCCAAGCCAAGTTCTCTTCGACGCCAGCAGCTTGTTCGGGAGTGCCCAATTCTTTCCAACATAGAGCCCAAGCAGATCAAAGTTTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGAAAATTGAATGCTATGAACAAGCTGTTAATGGAGGAGAATGATCGGCTGCAGAAGCAAGTGTCGCAATTGGTGTGTGAAAATGGGTTTATGAGGCAGCAATTGCAAACAGTGCCAGCAGCAGCAACTACTGATGCAAGCTGTGACTCTGTGGTCACCACTCCTCAACCCTCTCGACGAGATGCTAATAACCCAGCTGGACTCCTCTCCATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGTGGTGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTTCAAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGGACAATTGAACTTGTTTACACGCAGGTATATGCTCCAACCACCCTTGCTCCTGCACGTGATTTTTGGACTCTAAGATACACAATAACTTTAGAAAACGGCAGCCTTGTGGTTTGCGAGAGATCTCTCTCTGGTTCTGGTGCTGGTCCTAGTGCAGCTGCTGCTGCTCAATTTGTGAGAGCTGAGATGCTCCCAAGTGGTTATCTGATTCGACCATGTGAGGGTGGTGGTTCCATCATACATATTGTTGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGTTGCGACCACTTTATGAATCATCGAAAGTAGTGGCTCAGAAGATGACAATAGCAGCACTGCGGTACGTTAGGCAAATAGCCCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTTGGCCGGCAACCTGCTGTTTTGCGGACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGGTTTAATGACAATGGATGGTCGTTGATTAATTGTGAAGCAACCCTTAAAGCCAATTCATACGCATATCCAGGGATGAGACCCACAAGGTTTACTGGTAGCCAAATCATCATGCCACTCGGTCAAACAATCGAGCACGAAGAGTTGCTTGAAGTAATTCGACTTGAAGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCGAGGGACATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAACGCTGTAGGAGCCTGTTCGGAACTCATTTTTGCTCCTATTGATGAGATGTTTCCAGACGATGCCCCATTGCTGCCTTCTGGTTTTCGAATCATACCATTGGATTCCAGAACAAGTGATGCTAAAGGTAGTCAACGGACTCTGGATCTAACATCAAGTCTTGAAGTGGGTTCTGGAACAAGCAATACTGCTGGAGATGCATCATCCAGTCAGAGCGCTAGATCGGTGTTAACTATTGCATTCCAGTTTCCTTTTGAAAGCAGCATGCAGGAAAATGTTGCAAACATGGCACACCAGTACGTACGTAGTGTCATTGCCTCGGTGCAGAGAGTTGCGATGGCCATATCTCCATCTGGGGGCAGTCCAGCGCTAGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTTACTCTAGCACACTGGATATGCAAGAGCTATAGCTTCCAATTGGGAACGGAGTTGATCAAGTCAGATTCCTTGGAAAGTGATTCCCTGTCGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTGAAGCAGTCACTGCCTGTTTTCTTGTTTGCAAACCAAGCTGGGCTTGACATGTTGGAGACAACTCTAGTAGCCTTACAAGACATCACATTGGATAAAATATTCGACGAGTCGGGTCGCAAAGCCTTGTGTGCTGATTTCCCAAAGTTAATGCAGCAGGGATTTGCATACTTGCCGGGAGGAATCTGTGCATCAACAATGGGGCGACACATTTCATATGAACAAGCCGTTGCATGGAAAGTCCTCGAGGCAGATGAGACAACAGTCCATTGCCTTGCCTTCTCATTCATAAACTGGTCTTTTGTTTGA 2322 46.86 MAMAIAHHRESSSGSITRHLDSSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLVRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAAATTDASCDSVVTTPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEATLKANSYAYPGMRPTRFTGSQIIMPLGQTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTSDAKGSQRTLDLTSSLEVGSGTSNTAGDASSSQSARSVLTIAFQFPFESSMQENVANMAHQYVRSVIASVQRVAMAISPSGGSPALGPKLSPGSPEALTLAHWICKSYSFQLGTELIKSDSLESDSLSKNLWNHQDAILCCSLKQSLPVFLFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFPKLMQQGFAYLPGGICASTMGRHISYEQAVAWKVLEADETTVHCLAFSFINWSFV 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16918673 16924747 - Lsi10G012650.1 Lsi10g01265 672822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01265 773 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Lsi10g01265 773 Gene3D - 201 379 IPR023393 -
Lsi10g01265 773 Gene3D - 19 91 - -
Lsi10g01265 773 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
Lsi10g01265 773 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Lsi10g01265 773 SUPERFAMILY Bet v1-like 164 376 - -
Lsi10g01265 773 MobiDBLite consensus disorder prediction 530 559 - -
Lsi10g01265 773 Pfam START domain 165 373 IPR002913 GO:0008289
Lsi10g01265 773 CDD START_ArGLABRA2_like 159 375 - -
Lsi10g01265 773 SMART START_1 164 374 IPR002913 GO:0008289
Lsi10g01265 773 CDD bZIP 77 116 - -
Lsi10g01265 773 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 423 773 - -
Lsi10g01265 773 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 423 - -
Lsi10g01265 773 CDD homeodomain 25 85 IPR001356 GO:0003677
Lsi10g01265 773 Pfam MEKHLA domain 628 772 IPR013978 -
Lsi10g01265 773 Coils Coil 80 121 - -
Lsi10g01265 773 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 423 773 IPR044830 GO:0003700
Lsi10g01265 773 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 423 IPR044830 GO:0003700
Lsi10g01265 773 SMART HOX_1 22 88 IPR001356 GO:0003677
Lsi10g01265 773 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00085 Lsi-Chr1:832790 Lsi10g01265 Lsi-Chr10:16918673 2.67E-149 dispersed
Lsi04g02325 Lsi-Chr4:30462708 Lsi10g01265 Lsi-Chr10:16918673 4.98E-45 dispersed
Lsi10g01265 Lsi-Chr10:16918673 Lsi05g02010 Lsi-Chr5:27152991 1.04E-16 dispersed
Lsi10g01265 Lsi-Chr10:16918673 Lsi03g00047 Lsi-Chr3:752550 4.73E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26079 PF01852 START 3.60E-46 CL0209 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01265 K09338 - csv:101215773 1439.48