Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01268 ATGGGGAAAGACGTTGAAGTTGCAGAGCAAGGCGAATTCCAAAGCAAGGACTATCAAGACCCACCCCCCGCCCCTCTCATCGACCCTGAAGAACTCACTAAATGGTCTCTTTACCGAGCCGCCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACCGTTTTGACCGTCATCGGTTACTCCCACCAGAGCGACCCTTCCGTTTCCTCTGACCCCTGTAACGGCGTCGGCATCCTCGGCATCGCTTGGGCTTTCGGCGGTATGATCTTCATCCTCGTTTACTGCACCGCCGGTATCTCCGGTGGCCACATTAACCCCGCCGTCACTTTCGGCCTCTTCTTAGCTCGCAAAGTCTCTCTGGTTCGTGCTCTGTTATACATCATTGCTCAGTGCGCCGGCGCTATTTGCGGCTGTGGTTTGGTTAAAGCCTTCCAATCTGCTTATTATGTTAGATACAACGGCGGCGCTAATATGCTTAATACTGGATATAACAAAGGAACTGGATTAGGCGCTGAAATCATCGGAACTTTCGTTCTTGTTTACACCGTTTTCTCTGCTACTGATCCCAAGAGAAACGCCAGAGATTCTCACGTTCCTGTTTTGGCTCCACTCCCAATTGGGTTTGCTGTGTTCATGGTTCATTTGGCTACAATCCCCATCACTGGAACTGGTATTAACCCTGCAAGAAGTTTCGGAGCTGCTGTCATATTCAACAAAGAGAAAGCCTGGGATGACCAATGGATTTTCTGGGTTGGGCCATTTATTGGAGCTGCAATTGCTGCAATTTACCATCAGTATGTGCTCAGAGCTGGAGCTATTAAAGCTCTTGGATCTTTCAGGAGCAACGCTTAA 858 49.77 MGKDVEVAEQGEFQSKDYQDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDPSVSSDPCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVKAFQSAYYVRYNGGANMLNTGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16972498 16974240 + Lsi10G012680.1 Lsi10g01268 672825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01268 285 MobiDBLite consensus disorder prediction 1 24 - -
Lsi10g01268 285 PANTHER AQUAPORIN PIP2-4-RELATED 1 285 - -
Lsi10g01268 285 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Lsi10g01268 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Lsi10g01268 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Lsi10g01268 285 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g01268 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g01268 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g01268 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g01268 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g01268 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g01268 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g01268 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g01268 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g01268 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01348 Lsi-Chr1:11669947 Lsi10g01268 Lsi-Chr10:16972498 5.12E-169 dispersed
Lsi01g01349 Lsi-Chr1:11680370 Lsi10g01268 Lsi-Chr10:16972498 1.70E-167 dispersed
Lsi03g01989 Lsi-Chr3:31267990 Lsi10g01268 Lsi-Chr10:16972498 4.75E-35 dispersed
Lsi08g00726 Lsi-Chr8:15605389 Lsi10g01268 Lsi-Chr10:16972498 7.70E-158 dispersed
Lsi09g00247 Lsi-Chr9:2583854 Lsi10g01268 Lsi-Chr10:16972498 9.42E-143 dispersed
Lsi09g00520 Lsi-Chr9:5432051 Lsi10g01268 Lsi-Chr10:16972498 5.30E-31 dispersed
Lsi10g00459 Lsi-Chr10:6669279 Lsi10g01268 Lsi-Chr10:16972498 1.46E-20 dispersed
Lsi04g00069 Lsi-Chr4:849854 Lsi10g01268 Lsi-Chr10:16972498 1.02E-108 transposed
Lsi11g01207 Lsi-Chr11:20597963 Lsi10g01268 Lsi-Chr10:16972498 1.35E-155 transposed
Lsi01g01346 Lsi-Chr1:11656610 Lsi10g01268 Lsi-Chr10:16972498 5.08E-147 wgd
Lsi10g01268 Lsi-Chr10:16972498 Lsi03g02029 Lsi-Chr3:31669324 4.52E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01268 K09872 - csv:101215300 547.354