Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi10g01278 | ATGACCGTAATCGACATCATCTTCCGAGTCGATTCCATTTGCAAGAAATACGAGAAGTATGATGTCGAGAAGCAGCGTGAGCTCAATGCTTATGGTAACGATGCCTTTGCTCGCCTCTTTGACGCCGTTGAAGTCGAAATCCACGCCGCTCTCCAGAAATCTGAGGATGCCTCAAATGAGAAGAATAGGGCTGCTGCAGTTGCCATGAACGCTGAGGTTCGACGGAAGAAGGCCCGATTGATGGATGAAGTCCCTAAGCTTCGTAAATTGGCTCATAAGAAGGTTAAAGGGGTTCCGAAAGAAGAGCTCGAGGTCAGAGATGATCTTGTTCTTGCGCTTGAAGAGAAGATTAAAGCCATACCAGATGGGAGTACCTCAGGAGCCAAACAATCTGGAGGATGGGGGTCCTCCTCCTCATCTAACAATATCAAGTTTGATTCATCAGATGGAAACTTTGAGAGCGAGCATTTCCAGCAAAGTGAAGAATCAAGCCAATTTCGAAATGAGTATGAAATGCGGAAGATGAAACAGGCATGTGAGACCAAGGTCTCGATGTCATATCTGAAGGAATTGGACAGGCAAGTTCCATTAATTGACGAGATCGACGCAAAGGTAGACAAGGTGACTGATGAGATTAAAAATACCAATGTTAGGCTGAAGGAAACGCTCTATGAGGTGAGATCCAGCCAAAACTTCTGCATTGATATTGTTCTTCTCTGTATAATTCTTGGAATTGCTTCTTACTTGTACAATATATTGAGCTGA | 765 | 44.18 | MTVIDIIFRVDSICKKYEKYDVEKQRELNAYGNDAFARLFDAVEVEIHAALQKSEDASNEKNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEELEVRDDLVLALEEKIKAIPDGSTSGAKQSGGWGSSSSSNNIKFDSSDGNFESEHFQQSEESSQFRNEYEMRKMKQACETKVSMSYLKELDRQVPLIDEIDAKVDKVTDEIKNTNVRLKETLYEVRSSQNFCIDIVLLCIILGIASYLYNILS | 254 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 17020737 | 17023570 | - | Lsi10G012780.1 | Lsi10g01278 | 672835 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi10g01278 | 254 | Coils | Coil | 198 | 218 | - | - | |
| Lsi10g01278 | 254 | CDD | SNARE_Qc | 190 | 221 | - | - | |
| Lsi10g01278 | 254 | Pfam | SNARE domain | 197 | 246 | IPR000727 | - | |
| Lsi10g01278 | 254 | MobiDBLite | consensus disorder prediction | 122 | 168 | - | - | |
| Lsi10g01278 | 254 | MobiDBLite | consensus disorder prediction | 124 | 159 | - | - | |
| Lsi10g01278 | 254 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 183 | 222 | IPR000727 | - | |
| Lsi10g01278 | 254 | PANTHER | SYNTAXIN-72 | 1 | 251 | - | - | |
| Lsi10g01278 | 254 | PANTHER | SYNTAXIN | 1 | 251 | IPR045242 | - | |
| Lsi10g01278 | 254 | Gene3D | - | 183 | 221 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi10g01278 | Lsi-Chr10:17020737 | Lsi03g02035 | Lsi-Chr3:31718590 | 1.38E-102 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi10g01278 | K08506 | - | csv:101211289 | 393.275 |