Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01281 ATGGCCGGAGGTGCCGCCGGAAGGTCCTTGGAAGAGACGCCGACGTGGGCCGTCGCCGCCGTTTGCTTTGTTCTGGTTCTGATTTCTATTATCATCGAACACATTCTCCATCTCATCGGAAAGTGGCTAAAGAAGAAGCATAAACGAGCTCTTTACGAAGCTCTCGAGAAAATCAAATCAGAGCTGATGCTGTTGGGATTCATATCGCTGCTTCTGACGGTGGGACAAAGCTTAATCACCAATGTTTGTATACCACCGAACGTGGCTGCCACGTGGCATCCATGTAGTCCTCAAAGAGATCAAGAATTAACCAAACAAGCCGACCTTCTTCTCGATTCCGATCTTAATCGCCGGAAACTTCTCGCCGTCTCTCATGTCAATGCCACTTTCCGCCGTGCCCTCGCCTCTGCCGGTGGAACCGACAAATGTGCTGCCAAGATGAGAAGTTGGAAATCGTGGGAAAAGGAGACCAGAACTGTGGAGTACCAATTCTCCCATGATCCAGAACGGTTTCGATTTGCAAGAGATACATCATTTGGGAGAAGACATTTAAGCTTTTGGACGAAATCTCCTTTCCTCATATGGATTGTTTGTTTCTTTAGACAATTCGTTAGGTCGGTTCCAAAGGTTGATTACTTGACCTTGAGACATGGTTTCGTCATGGCTCATCTGGCACCGCATAGCGATCAGAAATTTGACTTTCAAAAATACATAAAACGATCTCTTGAAGAAGATTTCAAGGTGGTCGTCAGTATCAGCCCTCCCATTTGGTTCTTCGCTGTCCTCTTCCTACTTTTCAACACCCATGGGTGGAGGGCTTATCTATGGCTGCCATTTGTGCCATTAATTATAGTGTTATTGGTGGGGACTAAATTGCAAGTGATAATTACGAAAATGGCCTTGAGGATTCAAGAAAGAGGGGAAGTGGTGAAGGGAGTGCCAGTGGTAGAGCCAGGGGATGACCTTTTTTGGTTCAATCGCCCTCGTCTTATTCTTTACCTTATCAATTTTAATGAGGTGCACATGATCTTGAGATGCATCAAAACATTAGTATTGGTTCAAATCCTTTGCAGTTACGTCACATTGCCTCTCTACGCTCTAGTCACACAGATGGGTTCGACGATGAAGCCAACGATTTTCAACGAAAGAGTAGCAACGGCTTTGAGAAACTGGCACCACACGGCTCGCAAACACATCAAGCAAAATCGCGGCTCACTAACACCGATGTCCAGCCGTCCCACCACTCCTTCCCACCACCTCTCGCCGGTCCACCTCCTTCGTCACTACCGAAGCGAATTGGACAGCGTCCATACCTCTCCTAGAAGATCCAATTTCGACAACGACCACTGGGACCCTGATTCCCCCTCCCCCTCCCACCACTTCTACCGCCGCTCCCAAGTTGCCGACGGTTCCGGTTCCTACAACCACCGCCGCGACGTGGAGGCCGCCGATATTGATGCCACCAATGATTCGCCTCGACCCGACCTGATGACCCAGTCAACAGATCCGGATGTTCAACGAACGAAAACTAATTCTGAACAATACGAAATTGACGTGGGGTCCAATGATTTCTCATTTGATAGAAGGGTTAATAGAGCAATTTATCTTTTTAGTTAA 1617 47.68 MAGGAAGRSLEETPTWAVAAVCFVLVLISIIIEHILHLIGKWLKKKHKRALYEALEKIKSELMLLGFISLLLTVGQSLITNVCIPPNVAATWHPCSPQRDQELTKQADLLLDSDLNRRKLLAVSHVNATFRRALASAGGTDKCAAKMRSWKSWEKETRTVEYQFSHDPERFRFARDTSFGRRHLSFWTKSPFLIWIVCFFRQFVRSVPKVDYLTLRHGFVMAHLAPHSDQKFDFQKYIKRSLEEDFKVVVSISPPIWFFAVLFLLFNTHGWRAYLWLPFVPLIIVLLVGTKLQVIITKMALRIQERGEVVKGVPVVEPGDDLFWFNRPRLILYLINFNEVHMILRCIKTLVLVQILCSYVTLPLYALVTQMGSTMKPTIFNERVATALRNWHHTARKHIKQNRGSLTPMSSRPTTPSHHLSPVHLLRHYRSELDSVHTSPRRSNFDNDHWDPDSPSPSHHFYRRSQVADGSGSYNHRRDVEAADIDATNDSPRPDLMTQSTDPDVQRTKTNSEQYEIDVGSNDFSFDRRVNRAIYLFS 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17031805 17038028 - Lsi10G012810.1 Lsi10g01281 672838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01281 538 MobiDBLite consensus disorder prediction 437 509 - -
Lsi10g01281 538 PANTHER MLO-LIKE PROTEIN 1 347 478 IPR004326 GO:0006952|GO:0016021
Lsi10g01281 538 PANTHER MLO-LIKE PROTEIN 1 144 337 IPR004326 GO:0006952|GO:0016021
Lsi10g01281 538 MobiDBLite consensus disorder prediction 397 420 - -
Lsi10g01281 538 PANTHER MLO-LIKE PROTEIN 1 1 144 IPR004326 GO:0006952|GO:0016021
Lsi10g01281 538 MobiDBLite consensus disorder prediction 492 509 - -
Lsi10g01281 538 PANTHER MLO-LIKE PROTEIN 347 478 - -
Lsi10g01281 538 PANTHER MLO-LIKE PROTEIN 144 337 - -
Lsi10g01281 538 PANTHER MLO-LIKE PROTEIN 1 144 - -
Lsi10g01281 538 MobiDBLite consensus disorder prediction 474 488 - -
Lsi10g01281 538 MobiDBLite consensus disorder prediction 437 458 - -
Lsi10g01281 538 Pfam Mlo family 145 337 IPR004326 GO:0006952|GO:0016021
Lsi10g01281 538 Pfam Mlo family 340 429 IPR004326 GO:0006952|GO:0016021
Lsi10g01281 538 Pfam Mlo family 8 145 IPR004326 GO:0006952|GO:0016021
Lsi10g01281 538 MobiDBLite consensus disorder prediction 401 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00059 Lsi-Chr4:739689 Lsi10g01281 Lsi-Chr10:17031805 0 dispersed
Lsi08g00776 Lsi-Chr8:16142106 Lsi10g01281 Lsi-Chr10:17031805 2.41E-97 dispersed
Lsi10g01281 Lsi-Chr10:17031805 Lsi02g01429 Lsi-Chr2:19828608 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01281 K08472 - csv:101212018 890.952