Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01284 ATGGAAATTGATCTGAACCAAACAGCCAGTGAGGTGGGGAAGAATGCATATTGCTATGGAAATTGTGAAGAGGGTCTTTGCAATTGTTGTTTATCCTCTTCAACTTCTTCTTGTTCCTCAAATTCATCGCCAACTCCCGTCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAACAAATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAGATGCGCACTTTTGACCTTCAGCCACAGATCCTCTGCAGGGTCATCAATGTCCACCTACTTGCCAATAAGGAGAATGATGAGGTCTATACACAACTTACTCTCCGTCCCTTGCCAGAGTTATTAGGCACTGGTCTAGAGGGCAAGGAGCTGGAGGAATTGGCGTTGAATGGGGCTGAGGGAGATGGGAGTGGAGGGTCGCCCACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCGTCTGACACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTTGTAAGTCAAAAGAATCTTATTTCTGGGGATGCAGTGCTCTTTTTAAGGGGTGAAAATGGAGAGTTAAGGTTGGGAATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGATTCAATTGTTGGCAACCAAAATTCTTGTGCAAACGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCACATTTGATGTGTTTTATAATCCAAGGGCATATCATGCACAATTTGTTATATCTTGTCAGAAGTATGTGAAGAGCATCAATAATCCGGTGACTGTAGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCACCAGAAAGAAGGTTTAATGGTGTAGTTGTTGGAATTGGTGACATGGATCCCTTTAGATGGCCGAACTCCAAGTGGAGATGCTTAACGGTCCGATGGGATAAAGATAGTGATCATCAAGAACGTGTTTCCCCCTGGGAGATCGATCCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCACCTAATAACGCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTGTTGTATCACCCTTTTATGGATGTGATACTGCAAAACGTTCACTGGACTTTGATGTGCGATCTTCTGCACAACAAAACCAAGTGTCAGGTGGAGTTGAAAAACTCAATATAGGTGATTATGTAAAGGTTCATGCGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTCCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACAAGAAAACCAGAATATAGTTTAGGTGTTTGGGGAAAGTTCAATCTCAGTGACAACTCTTTTAACACATTTCAATCACCAAACTCCAATGTTTATCACATGGCGTCTAATGGCGCCCAAAACATGTATTACCCTCGCAGTGAAATGTACAGTTCTGGCCAAGCGGCCATGATGCGCTCAAATGATAGCAACTTTCCAAGAGAGAATGCCTTGTTCAACCCATCTGCTGTTGGTGCTAGTGTTATGAGGACTAAAATGGAAAGGACTAATCGTTCACTTGATCGGGAGTCTCTACATCTAGTGTCTACTCCTCCAACTTTAGGGTCGAATATGAGGAATTCAAAGGATGAAAATGTGAGTGAGAACCAAACTGGCTGTAAAATTTTTGGCTTTTCCTTGACTACGGAAACTGCTACAAACATGCAAAATTCAGGAAAGAGAAGTTGTACCAAGGTTCACAAACAAGGCAGCCTGGTGGGAAGAGCTATTGATCTCTCTAGGCTGAATGGCTATACCGATCTGATTTCTGAACTGGAGCGGCTGTTTAGCATGGAAGGTCTCTTAAAAGATCCTGATAAAGGATGGCGAGTGTTGTACACTGACAACGAGAACGACGTTATGGTTGTTGGGGATTATCCATGGCATGACTTCTGTGATGCGGTTTCAAAAATCCATATATACACACAAGAAGAAGTGGAAAAGATGACAAATGGAGTGACCAGTGATGATACTCAAAGCTGCTTAGACCAGGCTCCTTTATGTATGGAAGCATCAAAATCCTCTTCAAAGCATGTGTTTTCCATATCTATTGCTCCGTCTGTCAAGCTCGAAGTCGGTAGCTTTGCTGCCATGAATGACGTCATGTACTTTCGTGTCCTCTCTGCCCTATAG 2472 44.22 MEIDLNQTASEVGKNAYCYGNCEEGLCNCCLSSSTSSCSSNSSPTPVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLRPLPELLGTGLEGKELEELALNGAEGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQNSCANDLARVVKAISTKSTFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSIRSSKVLQGQENVGVVSPFYGCDTAKRSLDFDVRSSAQQNQVSGGVEKLNIGDYVKVHANSSFTGFMESDRFLKVLQGQEICSLRPPTRKPEYSLGVWGKFNLSDNSFNTFQSPNSNVYHMASNGAQNMYYPRSEMYSSGQAAMMRSNDSNFPRENALFNPSAVGASVMRTKMERTNRSLDRESLHLVSTPPTLGSNMRNSKDENVSENQTGCKIFGFSLTTETATNMQNSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLISELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTQEEVEKMTNGVTSDDTQSCLDQAPLCMEASKSSSKHVFSISIAPSVKLEVGSFAAMNDVMYFRVLSAL 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17084884 17091247 + Lsi10G012840.1 Lsi10g01284 672841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01284 823 ProSiteProfiles PB1 domain profile. 674 758 IPR000270 GO:0005515
Lsi10g01284 823 SUPERFAMILY CAD & PB1 domains 675 753 - -
Lsi10g01284 823 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677
Lsi10g01284 823 CDD B3_DNA 167 269 IPR003340 GO:0003677
Lsi10g01284 823 SUPERFAMILY DNA-binding pseudobarrel domain 163 280 IPR015300 -
Lsi10g01284 823 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Lsi10g01284 823 Gene3D - 670 763 - -
Lsi10g01284 823 Pfam Auxin response factor 296 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lsi10g01284 823 Gene3D - 167 271 IPR015300 -
Lsi10g01284 823 SMART B3_2 169 271 IPR003340 GO:0003677
Lsi10g01284 823 PANTHER AUXIN RESPONSE FACTOR 18 790 - -
Lsi10g01284 823 Pfam AUX/IAA family 722 759 IPR033389 -
Lsi10g01284 823 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 790 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lsi10g01284 823 Gene3D - 333 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00279 Lsi-Chr1:2484558 Lsi10g01284 Lsi-Chr10:17084884 3.51E-152 dispersed
Lsi06g01682 Lsi-Chr6:27009010 Lsi10g01284 Lsi-Chr10:17084884 7.17E-161 dispersed
Lsi10g01284 Lsi-Chr10:17084884 Lsi11g00096 Lsi-Chr11:993183 6.48E-27 dispersed
Lsi10g01284 Lsi-Chr10:17084884 Lsi01g00116 Lsi-Chr1:1225345 6.74E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26081 PF02362 B3 1.20E-20 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01284 - - cmo:103501935 1469.91