Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01288 ATGGGATCATTATGGGAGGACCTGGGAAAGGCAATGGAAGGTGAGGATGAAATCGAAGTTGGAGAAGTTGATTGTGGTTCTAACAAACCAGTTTGTTCTAAAGTTGATATCCATTCATATCCCACGTTTAAGCTTTTCTATGAAGGGGAAGAAGTTGCAAAGTATACAGGGCCAAGAGATGTTGAATCTCTCAAAAGCTTTGTTCTCGAAGAAGCTGAAAAGGCAGCAGAAAAAGTGCAGCAGGACAGTTACAAGTTTAAAATGGGGAAAGAGAAGGTTCACATTAACATTGTGGTCATTGGTCATGTCGACTCTGGGAAGTCTACCACCACCGGACACTTGATCTATAAGCTTGGTGGTATTGACAAGCGTGTCATTGAAAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCCTTCAAGTATGCCTGGGTGTTGGACAAGCTTAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTTGAAACCACCAAATACTACTGCACCGTTATTGATGCCCCTGGACATCGCGATTTCATTAAGAACATGATTACTGGTACCTCACAAGCTGATTGTGCTGTTCTCATTATTGACTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGTCAAACCCGTGAGCACGCTTTGCTTGCGTTTACTCTCGGAGTCAAGCAGATGATTTGCTGCTGCAACAAGATGGATGCCACCACCCCCAAGTACTCCAAGGCAAGGTATGATGAAATTGTCAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGATACAACCCTGACAAAATCCCATTTGTCCCCATCTCTGGTTTCGAAGGAGACAACATGATTGAGAGATCAACCAACCTTGATTGGTACAAGGGTCCAACTCTCCTTGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCAGACAAGCCACTCCGTCTTCCACTTCAGGATGTGTACAAGATTGGTGGTATTGGAACTGTACCGGTTGGACGTGTTGAGACTGGTGTCCTCAAACCTGGAATGGTTGTCACTTTTGGCCCTTCTGGATTGACCACTGAAGTTAAGTCTGTTGAGATGCACCATGAAGCTCTCCCCGAGGCTGTTCCCGGTGACAACGTGGGATTCAACGTGAAGAACGTTGCTGTAAAGGATCTCAAACGTGGTTTCGTTGCTTCCAACTCAAAGGATGACCCTGCCAAGGAAGCTGCCAACTTCACTTCTCAAGTAATTATCATGAACCACCCAGGACAAATTGGCAATGGTTATGCTCCAGTGCTCGATTGCCATACCTCTCACATTGCCGTGAAGTTTGCCGAGATTCAAACCAAGATCGACAGGCGATCAGGCAAGGAACTTGAGAAGGAACCTAAATTCTTAAAGAATGGTGATGCAGGTATGATTAAGATGGTTCCCACCAAGCCTATGGTGGTGGAAACTTTCTCTCAGTACCCTCCTCTTGGACGTTTTGCCGTGAGGGACATGAGACAGACCGTTGCTGTCGGCGTCATCAAGTCCGTCGAAAAGAAGGATCCAAGTGGTGCTAAGGTTACCAAGTCCGCAGTCAAGAAGGGTGGAAAGTGA 1611 46.24 MGSLWEDLGKAMEGEDEIEVGEVDCGSNKPVCSKVDIHSYPTFKLFYEGEEVAKYTGPRDVESLKSFVLEEAEKAAEKVQQDSYKFKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALPEAVPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAVKKGGK 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17113450 17121049 - Lsi10G012880.1 Lsi10g01288 672845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01288 536 CDD EF1_alpha_II 317 407 - -
Lsi10g01288 536 Gene3D Translation factors 410 517 - -
Lsi10g01288 536 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 92 317 IPR000795 GO:0003924|GO:0005525
Lsi10g01288 536 CDD EF1_alpha_III 410 513 - -
Lsi10g01288 536 Pfam Thioredoxin 3 68 IPR013766 -
Lsi10g01288 536 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 413 516 IPR009001 -
Lsi10g01288 536 Pfam Elongation factor Tu GTP binding domain 93 308 IPR000795 GO:0003924|GO:0005525
Lsi10g01288 536 SUPERFAMILY Thioredoxin-like 3 70 IPR036249 -
Lsi10g01288 536 Gene3D - 88 313 IPR027417 -
Lsi10g01288 536 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 88 534 - -
Lsi10g01288 536 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 88 520 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lsi10g01288 536 Gene3D Translation factors 316 403 - -
Lsi10g01288 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 336 IPR027417 -
Lsi10g01288 536 Pfam Elongation factor Tu C-terminal domain 409 516 IPR004160 -
Lsi10g01288 536 SUPERFAMILY Translation proteins 318 408 IPR009000 -
Lsi10g01288 536 Gene3D Glutaredoxin 1 87 - -
Lsi10g01288 536 Hamap Elongation factor Tu [tuf]. 89 519 IPR004539 GO:0003746|GO:0005525|GO:0006414
Lsi10g01288 536 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 148 163 IPR031157 -
Lsi10g01288 536 PRINTS GTP-binding elongation factor signature 96 109 IPR000795 GO:0003924|GO:0005525
Lsi10g01288 536 PRINTS GTP-binding elongation factor signature 175 185 IPR000795 GO:0003924|GO:0005525
Lsi10g01288 536 PRINTS GTP-binding elongation factor signature 235 244 IPR000795 GO:0003924|GO:0005525
Lsi10g01288 536 PRINTS GTP-binding elongation factor signature 155 163 IPR000795 GO:0003924|GO:0005525
Lsi10g01288 536 PRINTS GTP-binding elongation factor signature 191 202 IPR000795 GO:0003924|GO:0005525
Lsi10g01288 536 CDD EF1_alpha 96 314 - -
Lsi10g01288 536 PANTHER TRANSLATION FACTOR 88 534 - -
Lsi10g01288 536 Pfam Elongation factor Tu domain 2 335 400 IPR004161 GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01702 Lsi-Chr2:22783343 Lsi10g01288 Lsi-Chr10:17113450 0 dispersed
Lsi02g01704 Lsi-Chr2:22788097 Lsi10g01288 Lsi-Chr10:17113450 0 dispersed
Lsi10g01288 Lsi-Chr10:17113450 Lsi11g01419 Lsi-Chr11:22732132 2.55E-10 dispersed
Lsi02g00219 Lsi-Chr2:1799171 Lsi10g01288 Lsi-Chr10:17113450 1.39E-87 transposed
Lsi02g02316 Lsi-Chr2:29753077 Lsi10g01288 Lsi-Chr10:17113450 1.99E-44 transposed
Lsi04g02185 Lsi-Chr4:28922951 Lsi10g01288 Lsi-Chr10:17113450 1.78E-93 transposed
Lsi09g01132 Lsi-Chr9:18223748 Lsi10g01288 Lsi-Chr10:17113450 0 transposed
Lsi10g01288 Lsi-Chr10:17113450 Lsi02g01701 Lsi-Chr2:22777519 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01288 K03231 - csv:101213221 895.96