Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01295 ATGGAAGGGAGTGATTCAATCATCACCGTTTCATCAACTCCACTATCTCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTATTGGCGCCCTATTTCCCTCCTACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGATTGAATCAAATGAATTAGGGCTTAAAATGTGCATTGATTTGTTACAAACTAACGACCTTGTTGCAATGAAATTTGGAGAACTCCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCAAAAGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATAGCTCATTCCAGAGTATCAGTCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA 663 46.15 MEGSDSIITVSSTPLSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQIESNELGLKMCIDLLQTNDLVAMKFGELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSFDDFNGSPHNSSFQSISPSYFDDSNVNSLWEPLWT 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17172135 17173645 - Lsi10G012950.1 Lsi10g01295 672852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01295 220 Pfam Lateral organ boundaries (LOB) domain 35 81 IPR004883 -
Lsi10g01295 220 Pfam Lateral organ boundaries (LOB) domain 105 158 IPR004883 -
Lsi10g01295 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 81 - -
Lsi10g01295 220 MobiDBLite consensus disorder prediction 1 30 - -
Lsi10g01295 220 MobiDBLite consensus disorder prediction 1 20 - -
Lsi10g01295 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 107 217 - -
Lsi10g01295 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 107 217 - -
Lsi10g01295 220 Coils Coil 140 167 - -
Lsi10g01295 220 ProSiteProfiles LOB domain profile. 34 161 IPR004883 -
Lsi10g01295 220 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 11 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01442 Lsi-Chr2:20109670 Lsi10g01295 Lsi-Chr10:17172135 5.37E-76 dispersed
Lsi10g01295 Lsi-Chr10:17172135 Lsi02g01015 Lsi-Chr2:10457656 3.77E-44 dispersed
Lsi10g01295 Lsi-Chr10:17172135 Lsi02g01697 Lsi-Chr2:22736296 1.58E-47 wgd
Lsi10g01295 Lsi-Chr10:17172135 Lsi04g00812 Lsi-Chr4:7712280 4.20E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26082 PF03195 LOB 1.00E-14 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01295 - - csv:101215067 294.278