Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01295 | ATGGAAGGGAGTGATTCAATCATCACCGTTTCATCAACTCCACTATCTCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTATTGGCGCCCTATTTCCCTCCTACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGATTGAATCAAATGAATTAGGGCTTAAAATGTGCATTGATTTGTTACAAACTAACGACCTTGTTGCAATGAAATTTGGAGAACTCCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCAAAAGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATAGCTCATTCCAGAGTATCAGTCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA | 663 | 46.15 | MEGSDSIITVSSTPLSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQIESNELGLKMCIDLLQTNDLVAMKFGELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSFDDFNGSPHNSSFQSISPSYFDDSNVNSLWEPLWT | 220 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 17172135 | 17173645 | - | Lsi10G012950.1 | Lsi10g01295 | 672852 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01295 | 220 | Pfam | Lateral organ boundaries (LOB) domain | 35 | 81 | IPR004883 | - | |
Lsi10g01295 | 220 | Pfam | Lateral organ boundaries (LOB) domain | 105 | 158 | IPR004883 | - | |
Lsi10g01295 | 220 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 11 | 81 | - | - | |
Lsi10g01295 | 220 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Lsi10g01295 | 220 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lsi10g01295 | 220 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1-LIKE | 107 | 217 | - | - | |
Lsi10g01295 | 220 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 107 | 217 | - | - | |
Lsi10g01295 | 220 | Coils | Coil | 140 | 167 | - | - | |
Lsi10g01295 | 220 | ProSiteProfiles | LOB domain profile. | 34 | 161 | IPR004883 | - | |
Lsi10g01295 | 220 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1-LIKE | 11 | 81 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g01442 | Lsi-Chr2:20109670 | Lsi10g01295 | Lsi-Chr10:17172135 | 5.37E-76 | dispersed | |
Lsi10g01295 | Lsi-Chr10:17172135 | Lsi02g01015 | Lsi-Chr2:10457656 | 3.77E-44 | dispersed | |
Lsi10g01295 | Lsi-Chr10:17172135 | Lsi02g01697 | Lsi-Chr2:22736296 | 1.58E-47 | wgd | |
Lsi10g01295 | Lsi-Chr10:17172135 | Lsi04g00812 | Lsi-Chr4:7712280 | 4.20E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26082 | PF03195 | LOB | 1.00E-14 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01295 | - | - | csv:101215067 | 294.278 |