Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01308 ATGGAGGAGTTCTTAGACAATATACCTCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTCCAGCTTATTATCCCCGTCGAGTCCGCTCATCGAGCCATTTCATACCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATGTAAAGCGATGTGCAGAGATGTCAAGGAAGTTAAGATTTTTCAAAGATCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGCCCAATTCTTCAAGAACATATTGAGCTAGAGGATTTAGAGATACGACTGGCTGATCATGAGCATGAGCTGATTGAAATGAACTCTAACAGCGAGAAGCTTAGACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGATGTCCAGTAATAGCCATTCAGTTTCAGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAACTATGTTGAGGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCATCCAACCAATCTGGTTTGAGATTTATATGCGGAATTATTTGTAAATCCAAAGTTCTTAGATTTGAAAGGATGCTGTTTCGTGCAACAAGGGGAAATATGCTTTTCAATCAGGCACCAGCAGATGTACAGATCATGGACCCCATATCTACGGAAATGGTCTTCTCCTTACCCTTGACTTTGTTTTTTGGTTTTAGGATTAAGGCCTATTGTGCGACCTCTTTTTATGTGCATTTTCCAATCTGCTTTGGTGTGGTTGAGAAAACAGTATTTGTTGTGTTTTTCTCTGGGGAGCAGGCCAGAAACAAAGTTTTGAAGATCTGTGAGGCATTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAAAGGCAGATAACTAGAGAAGTGTCATCTCGCCTCACTGAGCTTGAGGCCACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCAATAGGGTTTCACTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATACGTTGAACATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGATGGTGCCCAATCTTTGCAAAAACTCAGATTCAGGAGGCACTGCAGCGAGCAACATTTGATAGTAGTTCACAAAACATATTGTTTGATCTATACGAATTGGAATTACATGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACACTGTTATTACATTTCCATTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGCTTGTTGCTTGGAGCTTTATTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGCCGCTATGTTCTTCTTTTGATGTCCCTATTTTCAATATATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCGTATCATATATTTGGTGCATCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCCCACACTGTTGGCTTAATTAAATACCGTGATGCCTATCCATTTGGTGTTGACCCGAGCTGGCGTGGAAGTCGTTCAGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGTTGTCTATCTTGTTGGGTATAGCTCAAATGAACTTAGGGATCATATTGAGTTATTTTAATGCACGTTTTACTGGAAGCTCACTTGATGTCAGGTACCAGTTTGTACCACAAGTCATCTTCCTTAACAGCCTTTTTGGATATCTTTCTCTTCTCATTGTCATCAAGTGGTGCACTGGGTCTCAAGCCGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGATGATCTTGGAGAGAACGAATTGTTTTGGGGCCAAAGACCTCTTCAAATTATCTTGTTGATGTTGGCTATAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATTTTGAAAAAGATTCACACAGAGAGATTTCAAGGTCGTACTTACGGGATGCTTGGAACCTCTGAGATAGATCTTGAGGTGGAACCTGATTCAGCAAGGCAACACCAAGAGGACTTCAATTTTAGTGAGATCTTTGTTCACCAAATGATTCACTCCATAGAATTCGTCTTGGGTGCAGTTTCAAATACAGCATCATATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAATTATCAACAGTTTTCTATGAGAAAGTACTCCTCTTAGCTTGGGGGTATGACAGCTTTGTCATCCGGCTGATTGGTTTAGCTGTTTTTTCGTTTGCAACTGCTTTCATACTACTTATGATGGAGACCCTTAGTGCCTTCCTTCATGCCTTGCGTCTTCATTGGGTTGAGTTTCAAAATAAGTTCTACCATGGTGATGGCCACAAGTTCAAACCCTTTTCCTTTGCCTCCATCGACGAGGACGAAGATTAA 2442 40.29 MEEFLDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELEDLEIRLADHEHELIEMNSNSEKLRQSYNELLEFKMVLQKASVFLMSSNSHSVSEERELNENVFLNDNYVEDGSLLEQEMRPGPSNQSGLRFICGIICKSKVLRFERMLFRATRGNMLFNQAPADVQIMDPISTEMVFSLPLTLFFGFRIKAYCATSFYVHFPICFGVVEKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQNILFDLYELELHVARYQEANPAVYTVITFPFLFAVMFGDWGHGICLLLGALFLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGASAYKCRDNSCSDAHTVGLIKYRDAYPFGVDPSWRGSRSELPFLNSLKMKLSILLGIAQMNLGIILSYFNARFTGSSLDVRYQFVPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKIHTERFQGRTYGMLGTSEIDLEVEPDSARQHQEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGHKFKPFSFASIDEDED 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17275742 17286084 + Lsi10G013080.1 Lsi10g01308 672865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01308 813 PIRSF ATP6V0A1 9 398 IPR026028 GO:0000220|GO:0046961
Lsi10g01308 813 PIRSF ATP6V0A1 397 813 IPR026028 GO:0000220|GO:0046961
Lsi10g01308 813 PANTHER VACUOLAR PROTON ATPASE A1 5 231 - -
Lsi10g01308 813 PANTHER VACUOLAR PROTON ATPASES 5 231 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lsi10g01308 813 PANTHER VACUOLAR PROTON ATPASE A1 247 813 - -
Lsi10g01308 813 Pfam V-type ATPase 116kDa subunit family 47 387 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lsi10g01308 813 Pfam V-type ATPase 116kDa subunit family 399 805 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lsi10g01308 813 Coils Coil 78 112 - -
Lsi10g01308 813 PANTHER VACUOLAR PROTON ATPASES 247 813 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01308 Lsi-Chr10:17275742 Lsi11g01128 Lsi-Chr11:19704107 0 dispersed
Lsi10g01308 Lsi-Chr10:17275742 Lsi08g01352 Lsi-Chr8:21826402 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01308 K02154 - csv:101216514 1479.54