Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01313 ATGTTTGATCTTAATCTCAATGTTGACTCACCTGATGCGACTCAGAATGAGGACTCCGTTGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGCTCTACACGCGCCGTTGGTGAGCTCTTCACGTTCAGCTTCGAGATATTGAAGGCTGGAAGCGCGAACGACGTTGTTACGAAGGAGCTTTTTCCAATTGGTGGAGCGGTGAATGCTGACTTCGGGATTCTTCAGGGGCATAACACCGCCTCTTCTTCATCAACGTCATCGAGGAAGAACTGGATCAATCTTGCGTTTGATCGAAGCGGGTCAGCAGGGGAGGGGAGAGTGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACAGGGCGGTGGGAATCTCATATCTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACATTCTGCCGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGATGCTGACATTAATTTCAATCTTAGTGATTATGAGGATGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGACAGAGTACTGGTTTCTCAAGAGGGAGCTCCAAATATAGAGGGGTGACATTGCACAAATGTGGCCGATGGGAAGCTAGGATGGGGCAGCTCCTTGGGAAAAAGTATATATATCTTGGGCTATTCGACAGCGAGGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACATACGGAGAGAGAATTTCTGATGGCAGCAGTGAAGGTGGGCGGAACGTGCTCGATTTGAATTTAGGGATTTCGCCTCCCTCACTTAACAACTGTCCAAAGGATACTGAGGGGCATCTGCGGTTTCAATCTGGTCCTTGTTATGCTAATGACAGGAGCACAATGATGGAGAGCAATGCTGGTGCAGCAGTTGGCGATCCGCCTTTGAAAGGACCAGTAATGACATCAGAGCATGCTCCCTCATGGAATGGTTTACAAACTAGCTTCTTTCCCAGTGAGGAAATCGTGACAGAGAAGAGACTCGCATTAGGTTCATCCCAAGGAGTCCCCCTCAACTGGGGATGGCAAATTCATAGCCAGGTTAATGCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCACTGTGCCGTCCGGGCTCGACCGCCCATAATCTCCATTTCACTTCTGCCAAAGCTTCCCTCAACTCCCCTCAGTATCACCACCAGTTGAACCCACAACAGGCACCACCATAA 1485 50.17 MFDLNLNVDSPDATQNEDSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAVGELFTFSFEILKAGSANDVVTKELFPIGGAVNADFGILQGHNTASSSSTSSRKNWINLAFDRSGSAGEGRVVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYGERISDGSSEGGRNVLDLNLGISPPSLNNCPKDTEGHLRFQSGPCYANDRSTMMESNAGAAVGDPPLKGPVMTSEHAPSWNGLQTSFFPSEEIVTEKRLALGSSQGVPLNWGWQIHSQVNATQVPLFSAAASSGFSFSATHFPAAIHPLCRPGSTAHNLHFTSAKASLNSPQYHHQLNPQQAPP 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17329232 17333177 + Lsi10G013130.1 Lsi10g01313 672870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01313 494 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Lsi10g01313 494 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Lsi10g01313 494 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Lsi10g01313 494 Pfam AP2 domain 248 298 IPR001471 GO:0003700|GO:0006355
Lsi10g01313 494 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Lsi10g01313 494 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Lsi10g01313 494 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700|GO:0006355
Lsi10g01313 494 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Lsi10g01313 494 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Lsi10g01313 494 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Lsi10g01313 494 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 457 - -
Lsi10g01313 494 MobiDBLite consensus disorder prediction 30 58 - -
Lsi10g01313 494 MobiDBLite consensus disorder prediction 131 158 - -
Lsi10g01313 494 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 457 - -
Lsi10g01313 494 MobiDBLite consensus disorder prediction 28 58 - -
Lsi10g01313 494 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Lsi10g01313 494 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677
Lsi10g01313 494 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Lsi10g01313 494 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00966 Lsi-Chr1:7854085 Lsi10g01313 Lsi-Chr10:17329232 1.62E-10 dispersed
Lsi01g01366 Lsi-Chr1:11847461 Lsi10g01313 Lsi-Chr10:17329232 3.47E-14 dispersed
Lsi10g00523 Lsi-Chr10:7461585 Lsi10g01313 Lsi-Chr10:17329232 2.31E-101 dispersed
Lsi10g01313 Lsi-Chr10:17329232 Lsi06g01180 Lsi-Chr6:22096693 1.40E-09 dispersed
Lsi01g01365 Lsi-Chr1:11841693 Lsi10g01313 Lsi-Chr10:17329232 2.89E-11 wgd
Lsi10g01313 Lsi-Chr10:17329232 Lsi03g02059 Lsi-Chr3:31912674 3.05E-128 wgd
Lsi10g01313 Lsi-Chr10:17329232 Lsi04g00819 Lsi-Chr4:7812200 2.57E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26084 PF00847 AP2 3.10E-09 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01313 K09284 - csv:101222024 926.391