Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01321 ATGACTAGTCCACATGGACTCACCACAAACTCAATGGAACCGTTGGATAAACCAGCGCCGAAGTCCTCGCCACTCGCGCCATTTCCTCGGGACTCTCGAGGATCGTTAGAGGTTTTCAATCCCTCGTCCACTTACTCGTCTCGATCTCGGCCGAACCCAACGTGGCCCAATTGGGTCGAGCCGCGTAGTAGTGCGGAGTCGGACTCAGCCAGACTCGCCACTAAACCGGCGAGTAAAACCGGCGAGGAAATTACGTCATGGATGGCTTTCAAGGACTCAAACCCTTCACCACAACCCTCATCCCCACTCGCTCAGAAGACAATATCGGCGATTCTCAGAGACAAATCGCCGTCGGGGAAGGCGAAATCGGCGGACGAAGTGGGTTCCGCCGCCCTACGCGCTGCCGAGTGGGGATTAGTACTGAAAACCGATACAGAGACTGGGAAGCCTCAAGGCGTTGGAGTTCGAACTTCCGGCGGCGATGAACCGAATACGAAACAGGAAAACTCGAGAAGGACTTCGAATAACTCGGTGCGGAGTTCGGGCGACATGTCGGAAGAAGGGGGAAGAGAAAGGGGAATTCCGAGAGTGTCTGAAGATTTGAAAGACGCTCTGTCGACATTTCAACAAACATTTGTGGTTTCTGATGCTACAAAACCTGATTATCCGATTATGTATGCTAGTGCTGGATTTTTCAAGATGACTGGCTATACTTCCAAGGAAGTTATTGGAAGAAACTGTCGATTTTTACAGGGTGCAGATACAGACCCTGAAGATGTGGCTAAGATCCGAGAAGCTTTACAAGCTGGGACAAGCTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCATTTTGGAACCTTCTTACTATTTCACCAATCAAAGATGATGATGGCAAAGTTCTTAAATTTATTGGAATGCAAGTGGAGGTGAGTAAACACACAGAGGGATTCAAAGATAAGATGGTCCGTCCCAATGGGTTGCCAGAATCCTTGATTCGTTATGATGCCCGTCAAAAGGAGATGGCTACCAGTTCGGTAACGGAGCTTGTACAGGCGGTGAAAAGGCCTCGGTCTGTAAGTGAATATAGGCCTCGGGCTCTAAGTGAATCTATGAACCGCCGGTTATTTAGAAAATCAGGCGGCGGTGGCGGTGACGGCGAAAACGACGGCGACAGATTTGAAACCACTATGGTTAGACGAAAGTCAGAGAGTGCAGCACCTTCAACTGGACGAAAATCGCAGGGAGGAAGTAGAAGGTCGATGCAGCGTATTAATGAGCTGCCGGAGAAAAAACCCAAAAAGTCTAGCCGTCGTTCATTTATGGGGATTATGAAGAAAAGTCAATCAAATGTTGAAAGCTTTGACATTGAAGATGCTTCCGACGATGATAACGAGACCGATGACGATGTTAGACCTGATAGTGTCGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATCGATTTAGCTACTACCCTTGAACGTATAGAGAAAAACTTTGTCATTACTGATCCTAGATTGCCTGACAATCCCATTTTGAATGAACATCACAGTATCTGTTATTATTCTGGATGTTGTAGATTTCTGCAAGGTCCTGAAACCGATCGAGCAACGGTCAAGAAAATAAGAGATGCAATCGACAACCAAACAGAGGTTACAGTGCAGCTGATTAACTACACAAAAAGCGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGATCAGAAGGGTGAAGTTCAGTATTTTATTGGAGTACAACTGGACGGTAGTCAACATGTGGAACCACTAAGCAATTCCATACCGGAAAGTACTGCAATGGAGGGCGAAAAATTGATAAAAGAAACTGCAGAAAATGTTGATTTGGCAGCCAGAGAACTTCCTGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCCAAGATGGTTCAACCTAAACCTCATAGAAAGGATAGTCCTTCTTGGAAAGCTATCCAGAAGATTATAGACAGTGGAGAACAGATAGGACTGAAACATTTCAAGCCAGTGAAGCCTTTGGGATCTGGTGATACTGGCAGTGTGCATTTGGTAGAACTGTGTGGGACTGATCAATATTTCGCAATGAAGGCAATGGATAAGGGTGTTCATAGAGCTTGCGCCGAGAGGGAAATACTCGACATGTTGGATCATCCTTTTCTTCCTGCATTATATGCTTCGTTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGACAGACAACCCACAAAGGTCATAAAAGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTGTCGTCGCATTGGAGTATCTCCATTGTCAAGGGATAATTTACCGGGATCTAAAGCCTGAGAATGTTCTACTTCAGAGCAATGGACACGTTGCCTTGACGGATTTTGACTTGTCATGTTTGACTTCTTGTAAACCTCAGCTTTTACTTCCAACAGCAAATGAGAAGAAAAAGCAATCAAGAGCTCAACAGGCTCCGATCTTTATGGCCGAACCAATGCGAGCGTCGAACTCCTTCGTCGGAACCGAAGAGTACATAGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTATCCTTCTATATGAAATGCTTTATGGATACACACCCTTTAGAGGGAAGACAAGGCAAAAGACATTTGCCAATATTCTCCACAAGGATCTTAAATTTCCAAGAAGTATATCGGCTAGTCTCAGTGTAAAGCAGTTAATCTTTAGGCTATTGCATAGAGACCCCAAAAACCGATTAGGCTCTCGAGAAGGAGCTAGCGAAATTAAACGACATCCTTTCTTCCGAGGCGTCAATTGGGCGCTCGTTCGTTGCATGAATCCTCCTGAGCTCGAAGCGCCTCTTTTCCAGGCCACCGATGGCGAAAAAGATGGTAATAAAGCATCAGATTTTGATCTAAAAGAACTTGAACTCAGTGTTTTCTGA 3024 45.5 MTSPHGLTTNSMEPLDKPAPKSSPLAPFPRDSRGSLEVFNPSSTYSSRSRPNPTWPNWVEPRSSAESDSARLATKPASKTGEEITSWMAFKDSNPSPQPSSPLAQKTISAILRDKSPSGKAKSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNTKQENSRRTSNNSVRSSGDMSEEGGRERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSVSEYRPRALSESMNRRLFRKSGGGGGDGENDGDRFETTMVRRKSESAAPSTGRKSQGGSRRSMQRINELPEKKPKKSSRRSFMGIMKKSQSNVESFDIEDASDDDNETDDDVRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPILNEHHSICYYSGCCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNSIPESTAMEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKMVQPKPHRKDSPSWKAIQKIIDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVIKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSNGHVALTDFDLSCLTSCKPQLLLPTANEKKKQSRAQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISASLSVKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMNPPELEAPLFQATDGEKDGNKASDFDLKELELSVF 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17417465 17430942 + Lsi10G013210.1 Lsi10g01321 672878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01321 1007 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Lsi10g01321 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 795 807 IPR008271 GO:0004672|GO:0006468
Lsi10g01321 1007 ProSiteProfiles PAC domain profile. 271 325 IPR000700 -
Lsi10g01321 1007 CDD PAS 536 595 IPR000014 -
Lsi10g01321 1007 MobiDBLite consensus disorder prediction 387 402 - -
Lsi10g01321 1007 Pfam Protein kinase domain 683 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01321 1007 PANTHER PHOTOTROPIN-1 145 1007 - -
Lsi10g01321 1007 PANTHER FLIPPASE KINASE 1-RELATED 145 1007 - -
Lsi10g01321 1007 SUPERFAMILY PYP-like sensor domain (PAS domain) 530 595 IPR035965 -
Lsi10g01321 1007 ProSiteProfiles Protein kinase domain profile. 681 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01321 1007 SUPERFAMILY Protein kinase-like (PK-like) 659 980 IPR011009 -
Lsi10g01321 1007 CDD STKc_phototropin_like 679 980 - -
Lsi10g01321 1007 Pfam PAS domain 530 595 IPR000014 -
Lsi10g01321 1007 Pfam PAS domain 218 314 IPR000014 -
Lsi10g01321 1007 TIGRFAM sensory_box: PAS domain S-box protein 224 316 IPR000014 -
Lsi10g01321 1007 MobiDBLite consensus disorder prediction 87 107 - -
Lsi10g01321 1007 CDD PAS 224 313 IPR000014 -
Lsi10g01321 1007 SMART serkin_6 681 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01321 1007 MobiDBLite consensus disorder prediction 404 424 - -
Lsi10g01321 1007 MobiDBLite consensus disorder prediction 458 473 - -
Lsi10g01321 1007 ProSiteProfiles PAC domain profile. 554 608 IPR000700 -
Lsi10g01321 1007 ProSiteProfiles PAS repeat profile. 197 268 IPR000014 -
Lsi10g01321 1007 SMART pac_2 557 599 IPR001610 -
Lsi10g01321 1007 SMART pac_2 274 316 IPR001610 -
Lsi10g01321 1007 MobiDBLite consensus disorder prediction 36 74 - -
Lsi10g01321 1007 MobiDBLite consensus disorder prediction 158 183 - -
Lsi10g01321 1007 SUPERFAMILY PYP-like sensor domain (PAS domain) 218 310 IPR035965 -
Lsi10g01321 1007 Gene3D PAS domain 211 367 - -
Lsi10g01321 1007 MobiDBLite consensus disorder prediction 358 485 - -
Lsi10g01321 1007 Gene3D PAS domain 477 633 - -
Lsi10g01321 1007 MobiDBLite consensus disorder prediction 142 195 - -
Lsi10g01321 1007 MobiDBLite consensus disorder prediction 1 127 - -
Lsi10g01321 1007 Gene3D Phosphorylase Kinase; domain 1 680 757 - -
Lsi10g01321 1007 MobiDBLite consensus disorder prediction 361 375 - -
Lsi10g01321 1007 Gene3D Transferase(Phosphotransferase) domain 1 758 971 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01229 Lsi-Chr9:19708524 Lsi10g01321 Lsi-Chr10:17417465 1.15E-49 dispersed
Lsi10g00018 Lsi-Chr10:296026 Lsi10g01321 Lsi-Chr10:17417465 5.21E-140 dispersed
Lsi10g01047 Lsi-Chr10:14698517 Lsi10g01321 Lsi-Chr10:17417465 1.98E-71 dispersed
Lsi11g00302 Lsi-Chr11:3127972 Lsi10g01321 Lsi-Chr10:17417465 2.21E-70 dispersed
Lsi11g00764 Lsi-Chr11:8612074 Lsi10g01321 Lsi-Chr10:17417465 6.46E-08 dispersed
Lsi10g01321 Lsi-Chr10:17417465 Lsi11g01320 Lsi-Chr11:21818657 8.11E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83981 PF00069 Pkinase 8.10E-61 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01321 K20715 - csv:101214662 1779.99