Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01321 | ATGACTAGTCCACATGGACTCACCACAAACTCAATGGAACCGTTGGATAAACCAGCGCCGAAGTCCTCGCCACTCGCGCCATTTCCTCGGGACTCTCGAGGATCGTTAGAGGTTTTCAATCCCTCGTCCACTTACTCGTCTCGATCTCGGCCGAACCCAACGTGGCCCAATTGGGTCGAGCCGCGTAGTAGTGCGGAGTCGGACTCAGCCAGACTCGCCACTAAACCGGCGAGTAAAACCGGCGAGGAAATTACGTCATGGATGGCTTTCAAGGACTCAAACCCTTCACCACAACCCTCATCCCCACTCGCTCAGAAGACAATATCGGCGATTCTCAGAGACAAATCGCCGTCGGGGAAGGCGAAATCGGCGGACGAAGTGGGTTCCGCCGCCCTACGCGCTGCCGAGTGGGGATTAGTACTGAAAACCGATACAGAGACTGGGAAGCCTCAAGGCGTTGGAGTTCGAACTTCCGGCGGCGATGAACCGAATACGAAACAGGAAAACTCGAGAAGGACTTCGAATAACTCGGTGCGGAGTTCGGGCGACATGTCGGAAGAAGGGGGAAGAGAAAGGGGAATTCCGAGAGTGTCTGAAGATTTGAAAGACGCTCTGTCGACATTTCAACAAACATTTGTGGTTTCTGATGCTACAAAACCTGATTATCCGATTATGTATGCTAGTGCTGGATTTTTCAAGATGACTGGCTATACTTCCAAGGAAGTTATTGGAAGAAACTGTCGATTTTTACAGGGTGCAGATACAGACCCTGAAGATGTGGCTAAGATCCGAGAAGCTTTACAAGCTGGGACAAGCTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCATTTTGGAACCTTCTTACTATTTCACCAATCAAAGATGATGATGGCAAAGTTCTTAAATTTATTGGAATGCAAGTGGAGGTGAGTAAACACACAGAGGGATTCAAAGATAAGATGGTCCGTCCCAATGGGTTGCCAGAATCCTTGATTCGTTATGATGCCCGTCAAAAGGAGATGGCTACCAGTTCGGTAACGGAGCTTGTACAGGCGGTGAAAAGGCCTCGGTCTGTAAGTGAATATAGGCCTCGGGCTCTAAGTGAATCTATGAACCGCCGGTTATTTAGAAAATCAGGCGGCGGTGGCGGTGACGGCGAAAACGACGGCGACAGATTTGAAACCACTATGGTTAGACGAAAGTCAGAGAGTGCAGCACCTTCAACTGGACGAAAATCGCAGGGAGGAAGTAGAAGGTCGATGCAGCGTATTAATGAGCTGCCGGAGAAAAAACCCAAAAAGTCTAGCCGTCGTTCATTTATGGGGATTATGAAGAAAAGTCAATCAAATGTTGAAAGCTTTGACATTGAAGATGCTTCCGACGATGATAACGAGACCGATGACGATGTTAGACCTGATAGTGTCGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATCGATTTAGCTACTACCCTTGAACGTATAGAGAAAAACTTTGTCATTACTGATCCTAGATTGCCTGACAATCCCATTTTGAATGAACATCACAGTATCTGTTATTATTCTGGATGTTGTAGATTTCTGCAAGGTCCTGAAACCGATCGAGCAACGGTCAAGAAAATAAGAGATGCAATCGACAACCAAACAGAGGTTACAGTGCAGCTGATTAACTACACAAAAAGCGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGATCAGAAGGGTGAAGTTCAGTATTTTATTGGAGTACAACTGGACGGTAGTCAACATGTGGAACCACTAAGCAATTCCATACCGGAAAGTACTGCAATGGAGGGCGAAAAATTGATAAAAGAAACTGCAGAAAATGTTGATTTGGCAGCCAGAGAACTTCCTGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCCAAGATGGTTCAACCTAAACCTCATAGAAAGGATAGTCCTTCTTGGAAAGCTATCCAGAAGATTATAGACAGTGGAGAACAGATAGGACTGAAACATTTCAAGCCAGTGAAGCCTTTGGGATCTGGTGATACTGGCAGTGTGCATTTGGTAGAACTGTGTGGGACTGATCAATATTTCGCAATGAAGGCAATGGATAAGGGTGTTCATAGAGCTTGCGCCGAGAGGGAAATACTCGACATGTTGGATCATCCTTTTCTTCCTGCATTATATGCTTCGTTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGACAGACAACCCACAAAGGTCATAAAAGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTGTCGTCGCATTGGAGTATCTCCATTGTCAAGGGATAATTTACCGGGATCTAAAGCCTGAGAATGTTCTACTTCAGAGCAATGGACACGTTGCCTTGACGGATTTTGACTTGTCATGTTTGACTTCTTGTAAACCTCAGCTTTTACTTCCAACAGCAAATGAGAAGAAAAAGCAATCAAGAGCTCAACAGGCTCCGATCTTTATGGCCGAACCAATGCGAGCGTCGAACTCCTTCGTCGGAACCGAAGAGTACATAGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTATCCTTCTATATGAAATGCTTTATGGATACACACCCTTTAGAGGGAAGACAAGGCAAAAGACATTTGCCAATATTCTCCACAAGGATCTTAAATTTCCAAGAAGTATATCGGCTAGTCTCAGTGTAAAGCAGTTAATCTTTAGGCTATTGCATAGAGACCCCAAAAACCGATTAGGCTCTCGAGAAGGAGCTAGCGAAATTAAACGACATCCTTTCTTCCGAGGCGTCAATTGGGCGCTCGTTCGTTGCATGAATCCTCCTGAGCTCGAAGCGCCTCTTTTCCAGGCCACCGATGGCGAAAAAGATGGTAATAAAGCATCAGATTTTGATCTAAAAGAACTTGAACTCAGTGTTTTCTGA | 3024 | 45.5 | MTSPHGLTTNSMEPLDKPAPKSSPLAPFPRDSRGSLEVFNPSSTYSSRSRPNPTWPNWVEPRSSAESDSARLATKPASKTGEEITSWMAFKDSNPSPQPSSPLAQKTISAILRDKSPSGKAKSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNTKQENSRRTSNNSVRSSGDMSEEGGRERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSVSEYRPRALSESMNRRLFRKSGGGGGDGENDGDRFETTMVRRKSESAAPSTGRKSQGGSRRSMQRINELPEKKPKKSSRRSFMGIMKKSQSNVESFDIEDASDDDNETDDDVRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPILNEHHSICYYSGCCRFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNSIPESTAMEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKMVQPKPHRKDSPSWKAIQKIIDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVIKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSNGHVALTDFDLSCLTSCKPQLLLPTANEKKKQSRAQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISASLSVKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMNPPELEAPLFQATDGEKDGNKASDFDLKELELSVF | 1007 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 17417465 | 17430942 | + | Lsi10G013210.1 | Lsi10g01321 | 672878 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01321 | 1007 | ProSitePatterns | Protein kinases ATP-binding region signature. | 687 | 710 | IPR017441 | GO:0005524 | |
Lsi10g01321 | 1007 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 795 | 807 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi10g01321 | 1007 | ProSiteProfiles | PAC domain profile. | 271 | 325 | IPR000700 | - | |
Lsi10g01321 | 1007 | CDD | PAS | 536 | 595 | IPR000014 | - | |
Lsi10g01321 | 1007 | MobiDBLite | consensus disorder prediction | 387 | 402 | - | - | |
Lsi10g01321 | 1007 | Pfam | Protein kinase domain | 683 | 961 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g01321 | 1007 | PANTHER | PHOTOTROPIN-1 | 145 | 1007 | - | - | |
Lsi10g01321 | 1007 | PANTHER | FLIPPASE KINASE 1-RELATED | 145 | 1007 | - | - | |
Lsi10g01321 | 1007 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 530 | 595 | IPR035965 | - | |
Lsi10g01321 | 1007 | ProSiteProfiles | Protein kinase domain profile. | 681 | 961 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g01321 | 1007 | SUPERFAMILY | Protein kinase-like (PK-like) | 659 | 980 | IPR011009 | - | |
Lsi10g01321 | 1007 | CDD | STKc_phototropin_like | 679 | 980 | - | - | |
Lsi10g01321 | 1007 | Pfam | PAS domain | 530 | 595 | IPR000014 | - | |
Lsi10g01321 | 1007 | Pfam | PAS domain | 218 | 314 | IPR000014 | - | |
Lsi10g01321 | 1007 | TIGRFAM | sensory_box: PAS domain S-box protein | 224 | 316 | IPR000014 | - | |
Lsi10g01321 | 1007 | MobiDBLite | consensus disorder prediction | 87 | 107 | - | - | |
Lsi10g01321 | 1007 | CDD | PAS | 224 | 313 | IPR000014 | - | |
Lsi10g01321 | 1007 | SMART | serkin_6 | 681 | 961 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g01321 | 1007 | MobiDBLite | consensus disorder prediction | 404 | 424 | - | - | |
Lsi10g01321 | 1007 | MobiDBLite | consensus disorder prediction | 458 | 473 | - | - | |
Lsi10g01321 | 1007 | ProSiteProfiles | PAC domain profile. | 554 | 608 | IPR000700 | - | |
Lsi10g01321 | 1007 | ProSiteProfiles | PAS repeat profile. | 197 | 268 | IPR000014 | - | |
Lsi10g01321 | 1007 | SMART | pac_2 | 557 | 599 | IPR001610 | - | |
Lsi10g01321 | 1007 | SMART | pac_2 | 274 | 316 | IPR001610 | - | |
Lsi10g01321 | 1007 | MobiDBLite | consensus disorder prediction | 36 | 74 | - | - | |
Lsi10g01321 | 1007 | MobiDBLite | consensus disorder prediction | 158 | 183 | - | - | |
Lsi10g01321 | 1007 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 218 | 310 | IPR035965 | - | |
Lsi10g01321 | 1007 | Gene3D | PAS domain | 211 | 367 | - | - | |
Lsi10g01321 | 1007 | MobiDBLite | consensus disorder prediction | 358 | 485 | - | - | |
Lsi10g01321 | 1007 | Gene3D | PAS domain | 477 | 633 | - | - | |
Lsi10g01321 | 1007 | MobiDBLite | consensus disorder prediction | 142 | 195 | - | - | |
Lsi10g01321 | 1007 | MobiDBLite | consensus disorder prediction | 1 | 127 | - | - | |
Lsi10g01321 | 1007 | Gene3D | Phosphorylase Kinase; domain 1 | 680 | 757 | - | - | |
Lsi10g01321 | 1007 | MobiDBLite | consensus disorder prediction | 361 | 375 | - | - | |
Lsi10g01321 | 1007 | Gene3D | Transferase(Phosphotransferase) domain 1 | 758 | 971 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi09g01229 | Lsi-Chr9:19708524 | Lsi10g01321 | Lsi-Chr10:17417465 | 1.15E-49 | dispersed | |
Lsi10g00018 | Lsi-Chr10:296026 | Lsi10g01321 | Lsi-Chr10:17417465 | 5.21E-140 | dispersed | |
Lsi10g01047 | Lsi-Chr10:14698517 | Lsi10g01321 | Lsi-Chr10:17417465 | 1.98E-71 | dispersed | |
Lsi11g00302 | Lsi-Chr11:3127972 | Lsi10g01321 | Lsi-Chr10:17417465 | 2.21E-70 | dispersed | |
Lsi11g00764 | Lsi-Chr11:8612074 | Lsi10g01321 | Lsi-Chr10:17417465 | 6.46E-08 | dispersed | |
Lsi10g01321 | Lsi-Chr10:17417465 | Lsi11g01320 | Lsi-Chr11:21818657 | 8.11E-17 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83981 | PF00069 | Pkinase | 8.10E-61 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01321 | K20715 | - | csv:101214662 | 1779.99 |