Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01334 ATGGACTGTGGAAGAACATTTGGTTTGCTGTTCTGGGTTGTGTTTATTTCCCTGCTGCCTTTCATTTCTTGTTTGTTTAATCCGGTAGATAAGTATCTTATTGACTGTGGATCGGCTGTTAATGTCTCTGTGGGTAATCGTGTTTTCATGGCTGATAATTTGGCTTCAAAGTTGCTTTCAACCCCACAAGTCATTCTGGCTGATTCTAATTCGTCTTCAGTACCTGCCAGTTCTTCTAATGATTCCTTGCTGTTCAAAACGGCTAGAATTTTCACAGGACCATCAAAATACAAGTTTCCAATAAAGGCTGGAAGGCACTGGATCCGTCTCTATTTCTATCCATTTGTATTTTCTAGCTTCAATATGAGTGCTGCAAATTTTAGTGTTTCGACCCAAGATTTTGTTCTGCTGCGAGATTTAGTTGCAGGGAAGAATCCTATAGTCAAAGAATTCTCTGTGAACATAACATCAGATACTCTTGAAGTTATCTTTGTTCCTGTTAATGGCTCCTTTGCATATGTGAATGCCATTGATGTTACTTCTGTTCCTGACATAGTCATTGTTGATGAAGCCAATTTGTTAGAACCATCTGGTAAATTTCAACGGCTGTCTAACCAGGCATATGAGACAGTTGCTAGGGTTAATATGGGTGGGCCGAATGTCTCTCCTGATAATGATCCTCTTACGCGAAGTTGGGTCTCTGATGAAGGCTTTTTAGTCAATAAGAATTCTGCAACAAGTTTCTCTAACATTGCAGCTGTTACATACGGTGCTGAAGGGGCAGCGCCAGAGATTGCTCCAAATGTTGTCTACGGTACCCTCACTGAGATGAACTCGAAAGATGATCCAAACAGCAATTTCAATGTGACATGGAAGTTTAAAGTGGATCCTGAGTTTCAGTATCTTGTTCGGTTTCACTTCTGTGACATTGTGAGCAAATCTCTACACCAACTTTATTTCAATGTTTACGTTGATTCGTGGCAGGTTGCTCGGGATCTAGATCTCAGTGTTCCTCTTAACAATGCTCTGAGCACTCCATACTATATAGACTCTGTTACAGGGGTGATCAAGAATAACATACTTCTTGTGAGTATTGGCCCATCGACTTTAGCCAATGTGTATCCAAATGCCATTCTAAATGGTCTGGAAATCATGAAAATGAACAACTCAGTTGGCAGTCTGAGTGGGGAAGACTCTGTAATTAGTTTTCCAGATACGACTTCTTCAAGTAAGCACATTGGCGTCATTGTGGGTGTGAGTGTCGGGGCATTTGTTGCAGCTATATTGGTTGGGATTCTGTTTATGCTACACAGACGAAAAAGAAAGGGAATGCATCAAGCTCCATCAAAAACGTGGATTTCAATATCCACTGCTGGAGGAATGTCACACACTATGGGAAGTAAATACTCAAATGGCACGATCACAAGTGCTGCTTCCAACTTTGGATATCGCATACCTTTTGCAACAGTTCAAGAGGCTACGAATAACTTTGATGAGAGCTGGGTTATTGGTATTGGTGGGTTCGGGAAAGTATACAAAGGAGTTTTAAATGATGGCACCAAAGTTGCTGTGAAGAGGGGTAATCCACGTTCCCAACAAGGACTGGCAGAGTTTCAAACTGAAATCGAGATGCTATCACAGTTCCGTCATCGTCATCTTGTTTCATTGATTGGGTACTGTGATGAGAGGAATGAGATGATATTGATTTATGAGTACATGGAACAGGGGACCCTGAAGAGTCATCTATATGGTTCTGATTTCCCTAGTTTGAGCTGGAAGGAGAGGTTAGAGGTCTGCATTGGAGCCGCTAGAGGACTTCATTACCTCCACACTGGTTATGCTAAACCGGTTATTCATCGTGATGTGAAGTCTGCTAATATTTTACTCGATGAAACTCTCATGGCAAAGGTTGCTGACTTTGGGCTTTCAAAGACTGGACCTGAGATTGACCAAACCCATGTCAGTACAGCTGTGAAAGGAAGTTTTGGGTACCTTGATCCTGAATATTTCAGGAGGCAACAACTGACTGAGAAATCAGATGTTTATTCTTTTGGAGTTGTTTTGTTTGAAGTCCTTTGTGCAAGACCTGTCATAGATCCAACCCTTCCTAGAGAAATGGTAAACTTAGCTGAATGGGCAATGAAATGGCAGAAGAAAGGGCAGTTGGACCAAATCATTGATCCTACATTAGTAGGAAAAATTAGACCAACTTCTCTTAGAAAGTTTGGAGAAACTGCTGAAAAATGCTTGGCCGACTATGGAGTTGACAGGCCATCAATGGGGGACGTGTTATGGAATTTGGAGTACGCGCTTCAGCTACAAGAAGCCGTTATTGAAGTTGATCCTGAAGATAACAGTACGAATATGATCGGTGAGCTATCTCCACAAATTAACAATTTCAACGATATCGAGGCAGGTGTTTCTGCCACACGGTTCGACATTCCGGGTGCGGATGATCTCTCTGGAGTCTCCATGAGTAGGGTGTTCTCTCAGCTGGTGAAATCTGAGGGTAGATGA 2517 41.95 MDCGRTFGLLFWVVFISLLPFISCLFNPVDKYLIDCGSAVNVSVGNRVFMADNLASKLLSTPQVILADSNSSSVPASSSNDSLLFKTARIFTGPSKYKFPIKAGRHWIRLYFYPFVFSSFNMSAANFSVSTQDFVLLRDLVAGKNPIVKEFSVNITSDTLEVIFVPVNGSFAYVNAIDVTSVPDIVIVDEANLLEPSGKFQRLSNQAYETVARVNMGGPNVSPDNDPLTRSWVSDEGFLVNKNSATSFSNIAAVTYGAEGAAPEIAPNVVYGTLTEMNSKDDPNSNFNVTWKFKVDPEFQYLVRFHFCDIVSKSLHQLYFNVYVDSWQVARDLDLSVPLNNALSTPYYIDSVTGVIKNNILLVSIGPSTLANVYPNAILNGLEIMKMNNSVGSLSGEDSVISFPDTTSSSKHIGVIVGVSVGAFVAAILVGILFMLHRRKRKGMHQAPSKTWISISTAGGMSHTMGSKYSNGTITSAASNFGYRIPFATVQEATNNFDESWVIGIGGFGKVYKGVLNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEQGTLKSHLYGSDFPSLSWKERLEVCIGAARGLHYLHTGYAKPVIHRDVKSANILLDETLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLDQIIDPTLVGKIRPTSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVIEVDPEDNSTNMIGELSPQINNFNDIEAGVSATRFDIPGADDLSGVSMSRVFSQLVKSEGR 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17550759 17553275 - Lsi10G013340.1 Lsi10g01334 672891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01334 838 Gene3D Phosphorylase Kinase; domain 1 460 572 - -
Lsi10g01334 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Lsi10g01334 838 Pfam Malectin-like domain 34 387 IPR024788 -
Lsi10g01334 838 PANTHER OS07G0166700 PROTEIN 19 830 IPR045272 GO:0004714|GO:0006468
Lsi10g01334 838 SUPERFAMILY Protein kinase-like (PK-like) 474 768 IPR011009 -
Lsi10g01334 838 Gene3D - 206 389 - -
Lsi10g01334 838 Gene3D - 31 183 - -
Lsi10g01334 838 Pfam Protein tyrosine and serine/threonine kinase 502 694 IPR001245 GO:0004672|GO:0006468
Lsi10g01334 838 CDD STKc_IRAK 503 768 - -
Lsi10g01334 838 PANTHER RECEPTOR-LIKE PROTEIN KINASE THESEUS 1 19 830 - -
Lsi10g01334 838 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01334 838 SMART serkin_6 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g01334 838 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Lsi10g01334 838 Gene3D Transferase(Phosphotransferase) domain 1 573 790 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00074 Lsi-Chr1:739636 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
Lsi02g01199 Lsi-Chr2:15311779 Lsi10g01334 Lsi-Chr10:17550759 3.78E-78 transposed
Lsi02g02766 Lsi-Chr2:33926792 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
Lsi03g02297 Lsi-Chr3:33825145 Lsi10g01334 Lsi-Chr10:17550759 4.80E-13 transposed
Lsi04g00726 Lsi-Chr4:6643541 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
Lsi04g01252 Lsi-Chr4:19491354 Lsi10g01334 Lsi-Chr10:17550759 6.85E-76 transposed
Lsi04g01289 Lsi-Chr4:20305282 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
Lsi05g00663 Lsi-Chr5:8672591 Lsi10g01334 Lsi-Chr10:17550759 3.98E-62 transposed
Lsi05g01200 Lsi-Chr5:19858103 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
Lsi06g01446 Lsi-Chr6:25020241 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
Lsi08g00234 Lsi-Chr8:5154164 Lsi10g01334 Lsi-Chr10:17550759 6.34E-61 transposed
Lsi09g01589 Lsi-Chr9:24022992 Lsi10g01334 Lsi-Chr10:17550759 5.32E-71 transposed
Lsi11g00433 Lsi-Chr11:4550758 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
Lsi10g01334 Lsi-Chr10:17550759 Lsi04g00839 Lsi-Chr4:8091470 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83982 PF12819 Malectin_like 2.10E-30 CL0202 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01334 - - csv:101218488 1521.14