Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01339 ATGCCGCAAAAAGGAATGAGGAGTGTGTTCTTCAAATCTCCAATTTCTTCTTCTATGCCGAGCACGCCGTCGTCGTCGTCGTCTCACCCCACTTTATCGGATTCAATGGTGGAAGAGAATCTTCAAGTTGCAGAATCGTTCGTGACGAGGTGGAGACCTGATTTCACTACAGTTGGTTCTTTGTTTCAAGGGGACGACCGTGATGAAGCTCGGAAATATATCAAAGCGGTTAAGGGTTTGTATGATTCCATGCACTGCCTTGCTTCTCGGGATTCATCTTCCGAGAAGCTTCTGCGTGCTCATGATTTGATGAAAACTGCCATGGAGAGGCTTCAGAAAGAATTTTACCAGATTTTGTCTGCTAATCGAGAATATTTGTATCCAGAATCGGTTTCTAGCGTCCAATCGCCGATGACGATATCCGCCAGATCGAGTGTTTCGGATTTTGAAATGGAATCGGAAGATGAATTCCGATTTGCTAACGAATCTATTGCGGAGGTTGAGCGAGTTTCTATCTCGGCTATGGCGGATTTGAAAGCAATTGCGGATTGTATGATATCGACTGGCTATGGTAAAGAATGTGTGAAGGTTTATAAAACTGTGAGGAAATCGATTATTGATGAGAGTCTCTATAATTTAGGGATTGAGAAACTGAGTTTTGCTAAAATTCAGAAGATGGATTGGGAGGTCCTGGAGATCAAAATCAAAATCTGGTTGAAAGGTGTGAAAACGGCAGTGAAGTCTTTGTTTGAAGGAGAGAGAATCCTTTGTGATCACGTTTTCTCAGCTTCCGTTCCAATCAGAGAATCGTGCTTTGCTCAAATTTCCAAAGATGGAGCAACGATTCTGTTTGGATTTCCAGAATTAGTTGCGAAATACAAAAAAACTCCAGAGAAAATTTTCATTACGCTAGACCTATACGAAGCCATAGCCGATCTCTGGCCGGAGATCGATTACATTTTCTCATCCACAGCAACATCGATGGTACAATCTCAAGCCGTAACTTCACTAATCAAACTTGGAGAAAACATTCGCACATTAATCACCGAATTCGAAATGGCTATTCAGAAGGAATCATCGAAAACGCCTGTTCCTAGAGGCGGAGTTCATCCACTAACTCGCTACGTGATGAACTACATTTCATTCCTCTCCGATTACAGTGGAATACTAAACGACATTGTAGCCGATTGGCTTCTAGCAACAAAATTATCAATGCCAGAATCATACTACGGAACACCTAAACAAGAAGATAGTCCGATTACCTTACGTTTCGCTTGGTTGATTCTCGTTCTCCTCTGCAAACTCGACGGCAAAGCAGAGCATTACAACGACGTCGCTCTCTCCTACTTGTTCTTAGCCAACAATCTCCATTACGTCGTTGAAAAAGTTCGTACCTCGAATTTGAGATTCATCCTCGGCAGCGACTGGATTGAGAGACACGAATCGAAGATCAAACTGTACTCCTCCAAGTACAGACGCATTGGATGGAGTGGAGTGTTCTCGTCGCTGCCGGCGGACGTCAAGACGGAAATCTCGCCGGAGGAAGCAAGTGAAACATTCAGAAATTTCAACAGAGCTTTTGAAGAAACTTACAGAAAACAAGCCTCCTGGATCGTGCCCAATCAGAAGCTTCGAGATGAAATGAAGATTTCACTAGCGAGGGAACTTGGAGCTTTATACGGCGAGTTTTACGCGAGGAATCGGGTTCGAGCGAGGCGGGTTTCTGGATCGGATCATGTGGTCCGATTATCCCCTGATGATTTGGGCAATTATTTGTCGGATCTATTTTACGGGTCTGGATCCGAAAGTGTAAGGAGCGGGTCCTCGTCTACTTCATCGTCTCATTCCTCGCCGTCTTCTCGAGGAAGATTCGTCCGTTGA 1881 44.18 MPQKGMRSVFFKSPISSSMPSTPSSSSSHPTLSDSMVEENLQVAESFVTRWRPDFTTVGSLFQGDDRDEARKYIKAVKGLYDSMHCLASRDSSSEKLLRAHDLMKTAMERLQKEFYQILSANREYLYPESVSSVQSPMTISARSSVSDFEMESEDEFRFANESIAEVERVSISAMADLKAIADCMISTGYGKECVKVYKTVRKSIIDESLYNLGIEKLSFAKIQKMDWEVLEIKIKIWLKGVKTAVKSLFEGERILCDHVFSASVPIRESCFAQISKDGATILFGFPELVAKYKKTPEKIFITLDLYEAIADLWPEIDYIFSSTATSMVQSQAVTSLIKLGENIRTLITEFEMAIQKESSKTPVPRGGVHPLTRYVMNYISFLSDYSGILNDIVADWLLATKLSMPESYYGTPKQEDSPITLRFAWLILVLLCKLDGKAEHYNDVALSYLFLANNLHYVVEKVRTSNLRFILGSDWIERHESKIKLYSSKYRRIGWSGVFSSLPADVKTEISPEEASETFRNFNRAFEETYRKQASWIVPNQKLRDEMKISLARELGALYGEFYARNRVRARRVSGSDHVVRLSPDDLGNYLSDLFYGSGSESVRSGSSSTSSSHSSPSSRGRFVR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17641018 17642898 - Lsi10G013390.1 Lsi10g01339 672896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01339 626 Gene3D Exocyst complex component Exo70 56 605 - -
Lsi10g01339 626 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 24 604 - -
Lsi10g01339 626 MobiDBLite consensus disorder prediction 12 35 - -
Lsi10g01339 626 PANTHER EXOCYST COMPLEX PROTEIN EXO70 24 604 IPR004140 GO:0000145|GO:0006887
Lsi10g01339 626 Coils Coil 94 114 - -
Lsi10g01339 626 SUPERFAMILY Cullin repeat-like 61 596 IPR016159 -
Lsi10g01339 626 MobiDBLite consensus disorder prediction 600 626 - -
Lsi10g01339 626 Pfam Exo70 exocyst complex subunit 238 594 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01339 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101212978 1077.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01398 Lsi-Chr2:19205607 Lsi10g01339 Lsi-Chr10:17641018 0 dispersed
Lsi10g01339 Lsi-Chr10:17641018 Lsi06g00498 Lsi-Chr6:5933403 3.59E-98 dispersed
Lsi02g00119 Lsi-Chr2:983187 Lsi10g01339 Lsi-Chr10:17641018 2.81E-73 transposed
Lsi04g00159 Lsi-Chr4:1783319 Lsi10g01339 Lsi-Chr10:17641018 4.14E-84 transposed
Lsi07g00662 Lsi-Chr7:7101373 Lsi10g01339 Lsi-Chr10:17641018 3.69E-107 transposed
Lsi07g00994 Lsi-Chr7:13795587 Lsi10g01339 Lsi-Chr10:17641018 9.06E-92 transposed
Lsi01g01391 Lsi-Chr1:12047640 Lsi10g01339 Lsi-Chr10:17641018 5.78E-143 wgd
Lsi10g01339 Lsi-Chr10:17641018 Lsi02g01397 Lsi-Chr2:19197156 0 wgd
Lsi10g01339 Lsi-Chr10:17641018 Lsi03g02079 Lsi-Chr3:32073809 0 wgd
Lsi10g01339 Lsi-Chr10:17641018 Lsi04g00846 Lsi-Chr4:8234422 7.54E-179 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g00159 . 12 682 EXO70 exocyst subunit family AT5G03540 75.3 4.8e-278 953.7
Lsi01g01185 . 1 619 EXO70 exocyst subunit family AT5G03540 68.7 1.2e-252 869.4
Lsi01g01185 . 1 619 EXO70 exocyst subunit family AT5G52340 77.4 8.7e-285 976.1
Lsi04g00159 . 14 682 EXO70 exocyst subunit family AT5G52340 70.2 1.5e-260 895.6
Lsi01g01185 . 145 612 EXO70 exocyst subunit family AT5G52350 60.2 5.1e-162 568.2
Lsi04g00159 . 183 682 EXO70 exocyst subunit family AT5G52350 57.9 5.4e-156 548.1
Lsi02g01250 . 1 626 EXO70 exocyst subunit family AT5G58430 67.5 4.2e-247 850.9
Lsi02g01250 . 1 625 EXO70 exocyst subunit family AT1G07000 52.1 5.3e-175 611.3
Lsi07g00009 . 77 663 EXO70 exocyst subunit family AT5G13150 54.5 2.2e-174 609.4
Lsi09g00909 . 106 718 EXO70 exocyst subunit family AT5G13990 54.5 5.2e-190 661.4
Lsi07g00662 CCT,ECH 9 609 EXO70 exocyst subunit family AT1G72470 66.2 2.9e-216 748.4
Lsi07g00662 CCT,ECH 9 607 EXO70 exocyst subunit family AT1G54090 63.0 1.0e-208 723.4
Lsi07g00662 CCT,ECH 9 608 EXO70 exocyst subunit family AT3G14090 63.7 9.0e-218 753.4
Lsi02g00502 . 18 656 EXO70 exocyst subunit family AT5G50380 62.4 4.7e-228 787.7
Lsi06g00498 . 13 650 EXO70 exocyst subunit family AT5G50380 61.5 1.2e-223 773.1
Lsi08g01120 . 13 682 EXO70 exocyst subunit family AT4G31540 73.9 4.5e-295 1010.4
Lsi04g00846 . 58 611 EXO70 exocyst subunit family AT3G55150 51.3 1.3e-150 530.4
Lsi10g01339 . 33 610 EXO70 exocyst subunit family AT3G55150 50.1 3.7e-150 528.9
Lsi04g00846 . 31 609 EXO70 exocyst subunit family AT2G39380 51.1 5.5e-154 541.6
Lsi03g02079 . 26 630 EXO70 exocyst subunit family AT3G09520 56.1 7.3e-183 637.5
Lsi10g01339 . 23 604 EXO70 exocyst subunit family AT5G59730 50.1 1.1e-154 543.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001818 3 2 3 3 3 2 0 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 3 3 2 2 2 0 68