Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01339 ATGCCGCAAAAAGGAATGAGGAGTGTGTTCTTCAAATCTCCAATTTCTTCTTCTATGCCGAGCACGCCGTCGTCGTCGTCGTCTCACCCCACTTTATCGGATTCAATGGTGGAAGAGAATCTTCAAGTTGCAGAATCGTTCGTGACGAGGTGGAGACCTGATTTCACTACAGTTGGTTCTTTGTTTCAAGGGGACGACCGTGATGAAGCTCGGAAATATATCAAAGCGGTTAAGGGTTTGTATGATTCCATGCACTGCCTTGCTTCTCGGGATTCATCTTCCGAGAAGCTTCTGCGTGCTCATGATTTGATGAAAACTGCCATGGAGAGGCTTCAGAAAGAATTTTACCAGATTTTGTCTGCTAATCGAGAATATTTGTATCCAGAATCGGTTTCTAGCGTCCAATCGCCGATGACGATATCCGCCAGATCGAGTGTTTCGGATTTTGAAATGGAATCGGAAGATGAATTCCGATTTGCTAACGAATCTATTGCGGAGGTTGAGCGAGTTTCTATCTCGGCTATGGCGGATTTGAAAGCAATTGCGGATTGTATGATATCGACTGGCTATGGTAAAGAATGTGTGAAGGTTTATAAAACTGTGAGGAAATCGATTATTGATGAGAGTCTCTATAATTTAGGGATTGAGAAACTGAGTTTTGCTAAAATTCAGAAGATGGATTGGGAGGTCCTGGAGATCAAAATCAAAATCTGGTTGAAAGGTGTGAAAACGGCAGTGAAGTCTTTGTTTGAAGGAGAGAGAATCCTTTGTGATCACGTTTTCTCAGCTTCCGTTCCAATCAGAGAATCGTGCTTTGCTCAAATTTCCAAAGATGGAGCAACGATTCTGTTTGGATTTCCAGAATTAGTTGCGAAATACAAAAAAACTCCAGAGAAAATTTTCATTACGCTAGACCTATACGAAGCCATAGCCGATCTCTGGCCGGAGATCGATTACATTTTCTCATCCACAGCAACATCGATGGTACAATCTCAAGCCGTAACTTCACTAATCAAACTTGGAGAAAACATTCGCACATTAATCACCGAATTCGAAATGGCTATTCAGAAGGAATCATCGAAAACGCCTGTTCCTAGAGGCGGAGTTCATCCACTAACTCGCTACGTGATGAACTACATTTCATTCCTCTCCGATTACAGTGGAATACTAAACGACATTGTAGCCGATTGGCTTCTAGCAACAAAATTATCAATGCCAGAATCATACTACGGAACACCTAAACAAGAAGATAGTCCGATTACCTTACGTTTCGCTTGGTTGATTCTCGTTCTCCTCTGCAAACTCGACGGCAAAGCAGAGCATTACAACGACGTCGCTCTCTCCTACTTGTTCTTAGCCAACAATCTCCATTACGTCGTTGAAAAAGTTCGTACCTCGAATTTGAGATTCATCCTCGGCAGCGACTGGATTGAGAGACACGAATCGAAGATCAAACTGTACTCCTCCAAGTACAGACGCATTGGATGGAGTGGAGTGTTCTCGTCGCTGCCGGCGGACGTCAAGACGGAAATCTCGCCGGAGGAAGCAAGTGAAACATTCAGAAATTTCAACAGAGCTTTTGAAGAAACTTACAGAAAACAAGCCTCCTGGATCGTGCCCAATCAGAAGCTTCGAGATGAAATGAAGATTTCACTAGCGAGGGAACTTGGAGCTTTATACGGCGAGTTTTACGCGAGGAATCGGGTTCGAGCGAGGCGGGTTTCTGGATCGGATCATGTGGTCCGATTATCCCCTGATGATTTGGGCAATTATTTGTCGGATCTATTTTACGGGTCTGGATCCGAAAGTGTAAGGAGCGGGTCCTCGTCTACTTCATCGTCTCATTCCTCGCCGTCTTCTCGAGGAAGATTCGTCCGTTGA 1881 44.18 MPQKGMRSVFFKSPISSSMPSTPSSSSSHPTLSDSMVEENLQVAESFVTRWRPDFTTVGSLFQGDDRDEARKYIKAVKGLYDSMHCLASRDSSSEKLLRAHDLMKTAMERLQKEFYQILSANREYLYPESVSSVQSPMTISARSSVSDFEMESEDEFRFANESIAEVERVSISAMADLKAIADCMISTGYGKECVKVYKTVRKSIIDESLYNLGIEKLSFAKIQKMDWEVLEIKIKIWLKGVKTAVKSLFEGERILCDHVFSASVPIRESCFAQISKDGATILFGFPELVAKYKKTPEKIFITLDLYEAIADLWPEIDYIFSSTATSMVQSQAVTSLIKLGENIRTLITEFEMAIQKESSKTPVPRGGVHPLTRYVMNYISFLSDYSGILNDIVADWLLATKLSMPESYYGTPKQEDSPITLRFAWLILVLLCKLDGKAEHYNDVALSYLFLANNLHYVVEKVRTSNLRFILGSDWIERHESKIKLYSSKYRRIGWSGVFSSLPADVKTEISPEEASETFRNFNRAFEETYRKQASWIVPNQKLRDEMKISLARELGALYGEFYARNRVRARRVSGSDHVVRLSPDDLGNYLSDLFYGSGSESVRSGSSSTSSSHSSPSSRGRFVR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17641018 17642898 - Lsi10G013390.1 Lsi10g01339 672896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01339 626 Gene3D Exocyst complex component Exo70 56 605 - -
Lsi10g01339 626 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 24 604 - -
Lsi10g01339 626 MobiDBLite consensus disorder prediction 12 35 - -
Lsi10g01339 626 PANTHER EXOCYST COMPLEX PROTEIN EXO70 24 604 IPR004140 GO:0000145|GO:0006887
Lsi10g01339 626 Coils Coil 94 114 - -
Lsi10g01339 626 SUPERFAMILY Cullin repeat-like 61 596 IPR016159 -
Lsi10g01339 626 MobiDBLite consensus disorder prediction 600 626 - -
Lsi10g01339 626 Pfam Exo70 exocyst complex subunit 238 594 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01398 Lsi-Chr2:19205607 Lsi10g01339 Lsi-Chr10:17641018 0 dispersed
Lsi10g01339 Lsi-Chr10:17641018 Lsi06g00498 Lsi-Chr6:5933403 3.59E-98 dispersed
Lsi02g00119 Lsi-Chr2:983187 Lsi10g01339 Lsi-Chr10:17641018 2.81E-73 transposed
Lsi04g00159 Lsi-Chr4:1783319 Lsi10g01339 Lsi-Chr10:17641018 4.14E-84 transposed
Lsi07g00662 Lsi-Chr7:7101373 Lsi10g01339 Lsi-Chr10:17641018 3.69E-107 transposed
Lsi07g00994 Lsi-Chr7:13795587 Lsi10g01339 Lsi-Chr10:17641018 9.06E-92 transposed
Lsi01g01391 Lsi-Chr1:12047640 Lsi10g01339 Lsi-Chr10:17641018 5.78E-143 wgd
Lsi10g01339 Lsi-Chr10:17641018 Lsi02g01397 Lsi-Chr2:19197156 0 wgd
Lsi10g01339 Lsi-Chr10:17641018 Lsi03g02079 Lsi-Chr3:32073809 0 wgd
Lsi10g01339 Lsi-Chr10:17641018 Lsi04g00846 Lsi-Chr4:8234422 7.54E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01339 K07195 - csv:101212978 1077.39