Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01368 ATGGAGGAGGATAACAATGGCGGCTCATTTCGGAGTTTGATCGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGATACGCGGTCAGAAAGCAGTATTGTAATTTAGCTAGGCGACTTAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATCAAGCAGGCGCTGCCGGATGATACCGTGAGAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCCAGGGGAGCAAGATTTATCTGGCGACATTTATGCTGCGATTGTTCCAGTATAGGAACGATGATTTGGGGAAATTGGAGTTCAAACGTTGGTCTAATTTAGCTGCCGATTTTGGATATTTTGTTTTGCAATATCTTAAACCATGTATTACTTTACAAATAATGCCGGCGATAGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGACTAGAGCAAGCTCTGAACGAAATTTCGCATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAAAGGAAGGAATGATACACAAGATGCCGAGCTGTATGTTAACCTCAACTCTCTCTATAACAACAACAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCCGAGAAGTTGCAGCTGGTCGATATAGCTGATCTTACTCAAGAGTCTCTTGCTTTACATGAAATGGTTTCGGCTAGCGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTGTTGAAGAAAATTAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAAAACAAAGTCATCCTCGCACTGGTGCACAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACGGGACAGACATATGAACGTACATTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCCAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGTCAATGGGATTGAACCACCACAACGTTCCAGCAGTTCTCAGCCCAGTGAGTTGACTCCGGCTGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGATCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATCATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACTGCTCTTTTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATTTTAGCCATACTGGCTAGCAATTCCGAAGGGCGAGCTGCCATTGGAGCAGCCGAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTCGTAGAAGCGAAGGAGCTCGGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGATTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAATCTCAGTCTCAAACACAACTGTTGTTACCACAACCTTCCGCAATCGGCAACATCGAAAGTTGA 2127 44.52 MEEDNNGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDIKQALPDDTVRALASLKEALESTKELLKHGSQGSKIYLATFMLRLFQYRNDDLGKLEFKRWSNLAADFGYFVLQYLKPCITLQIMPAIALEREQILNQFHEVTARLEQALNEISHEDLDISDEVKEQVELVLSQFKRAKGRNDTQDAELYVNLNSLYNNNRDSVDPSVLKGLAEKLQLVDIADLTQESLALHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGLSSKKQSHPRTGAQVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERTFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSSSSQPSELTPAERSKYEALLHKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNIES 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17834008 17838730 - Lsi10G013680.1 Lsi10g01368 672925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01368 708 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 141 689 - -
Lsi10g01368 708 SMART Ubox_2 311 374 IPR003613 GO:0004842|GO:0016567
Lsi10g01368 708 PANTHER U BOX DOMAIN-CONTAINING 141 689 - -
Lsi10g01368 708 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 92 - -
Lsi10g01368 708 SMART arm_5 431 471 IPR000225 GO:0005515
Lsi10g01368 708 SMART arm_5 513 553 IPR000225 GO:0005515
Lsi10g01368 708 SMART arm_5 472 512 IPR000225 GO:0005515
Lsi10g01368 708 SMART arm_5 595 635 IPR000225 GO:0005515
Lsi10g01368 708 SMART arm_5 554 594 IPR000225 GO:0005515
Lsi10g01368 708 SUPERFAMILY RING/U-box 302 382 - -
Lsi10g01368 708 Gene3D - 544 685 IPR011989 -
Lsi10g01368 708 Pfam U-box domain 308 378 IPR003613 GO:0004842|GO:0016567
Lsi10g01368 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 381 IPR013083 -
Lsi10g01368 708 PANTHER U BOX DOMAIN-CONTAINING 11 92 - -
Lsi10g01368 708 Pfam Armadillo/beta-catenin-like repeat 432 470 IPR000225 GO:0005515
Lsi10g01368 708 Pfam Armadillo/beta-catenin-like repeat 595 634 IPR000225 GO:0005515
Lsi10g01368 708 Pfam Armadillo/beta-catenin-like repeat 514 552 IPR000225 GO:0005515
Lsi10g01368 708 CDD RING-Ubox_PUB 312 354 IPR045210 -
Lsi10g01368 708 Gene3D - 387 539 IPR011989 -
Lsi10g01368 708 ProSiteProfiles U-box domain profile. 307 381 IPR003613 GO:0004842|GO:0016567
Lsi10g01368 708 Coils Coil 145 165 - -
Lsi10g01368 708 Gene3D - 9 103 IPR036537 GO:0007166
Lsi10g01368 708 SUPERFAMILY ARM repeat 403 675 IPR016024 -
Lsi10g01368 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 480 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01368 - - - csv:101221150 1122.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00088 Lsi-Chr4:1040825 Lsi10g01368 Lsi-Chr10:17834008 0 dispersed
Lsi09g00646 Lsi-Chr9:7207350 Lsi10g01368 Lsi-Chr10:17834008 1.27E-78 dispersed
Lsi10g00540 Lsi-Chr10:7732852 Lsi10g01368 Lsi-Chr10:17834008 1.38E-09 dispersed
Lsi10g00826 Lsi-Chr10:11573842 Lsi10g01368 Lsi-Chr10:17834008 2.24E-153 dispersed
Lsi11g00916 Lsi-Chr11:12641850 Lsi10g01368 Lsi-Chr10:17834008 1.61E-72 dispersed
Lsi01g00373 Lsi-Chr1:3288460 Lsi10g01368 Lsi-Chr10:17834008 3.14E-56 transposed
Lsi04g00332 Lsi-Chr4:3381127 Lsi10g01368 Lsi-Chr10:17834008 3.63E-11 transposed
Lsi04g01143 Lsi-Chr4:15795236 Lsi10g01368 Lsi-Chr10:17834008 3.56E-133 transposed
Lsi04g02334 Lsi-Chr4:30554669 Lsi10g01368 Lsi-Chr10:17834008 6.97E-09 transposed
Lsi05g01140 Lsi-Chr5:19154644 Lsi10g01368 Lsi-Chr10:17834008 6.30E-89 transposed
Lsi06g00466 Lsi-Chr6:5392136 Lsi10g01368 Lsi-Chr10:17834008 1.19E-12 transposed
Lsi06g00851 Lsi-Chr6:17939413 Lsi10g01368 Lsi-Chr10:17834008 5.94E-16 transposed
Lsi08g00922 Lsi-Chr8:17626080 Lsi10g01368 Lsi-Chr10:17834008 1.24E-33 transposed
Lsi10g01368 Lsi-Chr10:17834008 Lsi02g01363 Lsi-Chr2:18368167 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013844 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 0 25