Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01368 ATGGAGGAGGATAACAATGGCGGCTCATTTCGGAGTTTGATCGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGATACGCGGTCAGAAAGCAGTATTGTAATTTAGCTAGGCGACTTAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATCAAGCAGGCGCTGCCGGATGATACCGTGAGAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCCAGGGGAGCAAGATTTATCTGGCGACATTTATGCTGCGATTGTTCCAGTATAGGAACGATGATTTGGGGAAATTGGAGTTCAAACGTTGGTCTAATTTAGCTGCCGATTTTGGATATTTTGTTTTGCAATATCTTAAACCATGTATTACTTTACAAATAATGCCGGCGATAGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGACTAGAGCAAGCTCTGAACGAAATTTCGCATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAAAGGAAGGAATGATACACAAGATGCCGAGCTGTATGTTAACCTCAACTCTCTCTATAACAACAACAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCCGAGAAGTTGCAGCTGGTCGATATAGCTGATCTTACTCAAGAGTCTCTTGCTTTACATGAAATGGTTTCGGCTAGCGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTGTTGAAGAAAATTAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAAAACAAAGTCATCCTCGCACTGGTGCACAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACGGGACAGACATATGAACGTACATTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCCAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGTCAATGGGATTGAACCACCACAACGTTCCAGCAGTTCTCAGCCCAGTGAGTTGACTCCGGCTGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGATCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATCATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACTGCTCTTTTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATACTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATTTTAGCCATACTGGCTAGCAATTCCGAAGGGCGAGCTGCCATTGGAGCAGCCGAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTCGTAGAAGCGAAGGAGCTCGGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGATTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAATCTCAGTCTCAAACACAACTGTTGTTACCACAACCTTCCGCAATCGGCAACATCGAAAGTTGA 2127 44.52 MEEDNNGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDIKQALPDDTVRALASLKEALESTKELLKHGSQGSKIYLATFMLRLFQYRNDDLGKLEFKRWSNLAADFGYFVLQYLKPCITLQIMPAIALEREQILNQFHEVTARLEQALNEISHEDLDISDEVKEQVELVLSQFKRAKGRNDTQDAELYVNLNSLYNNNRDSVDPSVLKGLAEKLQLVDIADLTQESLALHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGLSSKKQSHPRTGAQVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERTFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSSSSQPSELTPAERSKYEALLHKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNIES 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17834008 17838730 - Lsi10G013680.1 Lsi10g01368 672925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01368 708 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 141 689 - -
Lsi10g01368 708 SMART Ubox_2 311 374 IPR003613 GO:0004842|GO:0016567
Lsi10g01368 708 PANTHER U BOX DOMAIN-CONTAINING 141 689 - -
Lsi10g01368 708 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 92 - -
Lsi10g01368 708 SMART arm_5 431 471 IPR000225 GO:0005515
Lsi10g01368 708 SMART arm_5 513 553 IPR000225 GO:0005515
Lsi10g01368 708 SMART arm_5 472 512 IPR000225 GO:0005515
Lsi10g01368 708 SMART arm_5 595 635 IPR000225 GO:0005515
Lsi10g01368 708 SMART arm_5 554 594 IPR000225 GO:0005515
Lsi10g01368 708 SUPERFAMILY RING/U-box 302 382 - -
Lsi10g01368 708 Gene3D - 544 685 IPR011989 -
Lsi10g01368 708 Pfam U-box domain 308 378 IPR003613 GO:0004842|GO:0016567
Lsi10g01368 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 381 IPR013083 -
Lsi10g01368 708 PANTHER U BOX DOMAIN-CONTAINING 11 92 - -
Lsi10g01368 708 Pfam Armadillo/beta-catenin-like repeat 432 470 IPR000225 GO:0005515
Lsi10g01368 708 Pfam Armadillo/beta-catenin-like repeat 595 634 IPR000225 GO:0005515
Lsi10g01368 708 Pfam Armadillo/beta-catenin-like repeat 514 552 IPR000225 GO:0005515
Lsi10g01368 708 CDD RING-Ubox_PUB 312 354 IPR045210 -
Lsi10g01368 708 Gene3D - 387 539 IPR011989 -
Lsi10g01368 708 ProSiteProfiles U-box domain profile. 307 381 IPR003613 GO:0004842|GO:0016567
Lsi10g01368 708 Coils Coil 145 165 - -
Lsi10g01368 708 Gene3D - 9 103 IPR036537 GO:0007166
Lsi10g01368 708 SUPERFAMILY ARM repeat 403 675 IPR016024 -
Lsi10g01368 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 480 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00088 Lsi-Chr4:1040825 Lsi10g01368 Lsi-Chr10:17834008 0 dispersed
Lsi09g00646 Lsi-Chr9:7207350 Lsi10g01368 Lsi-Chr10:17834008 1.27E-78 dispersed
Lsi10g00540 Lsi-Chr10:7732852 Lsi10g01368 Lsi-Chr10:17834008 1.38E-09 dispersed
Lsi10g00826 Lsi-Chr10:11573842 Lsi10g01368 Lsi-Chr10:17834008 2.24E-153 dispersed
Lsi11g00916 Lsi-Chr11:12641850 Lsi10g01368 Lsi-Chr10:17834008 1.61E-72 dispersed
Lsi01g00373 Lsi-Chr1:3288460 Lsi10g01368 Lsi-Chr10:17834008 3.14E-56 transposed
Lsi04g00332 Lsi-Chr4:3381127 Lsi10g01368 Lsi-Chr10:17834008 3.63E-11 transposed
Lsi04g01143 Lsi-Chr4:15795236 Lsi10g01368 Lsi-Chr10:17834008 3.56E-133 transposed
Lsi04g02334 Lsi-Chr4:30554669 Lsi10g01368 Lsi-Chr10:17834008 6.97E-09 transposed
Lsi05g01140 Lsi-Chr5:19154644 Lsi10g01368 Lsi-Chr10:17834008 6.30E-89 transposed
Lsi06g00466 Lsi-Chr6:5392136 Lsi10g01368 Lsi-Chr10:17834008 1.19E-12 transposed
Lsi06g00851 Lsi-Chr6:17939413 Lsi10g01368 Lsi-Chr10:17834008 5.94E-16 transposed
Lsi08g00922 Lsi-Chr8:17626080 Lsi10g01368 Lsi-Chr10:17834008 1.24E-33 transposed
Lsi10g01368 Lsi-Chr10:17834008 Lsi02g01363 Lsi-Chr2:18368167 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01368 - - csv:101221150 1122.07