Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi10g01374 | ATGGCAGAAGGGGAGGATATTCAGCCACTTGTCTGCGACAATGGAACGGGAATGGTCAAGGCTGGCTTTGCTGGAGATGATGCTCCACGGGCCGTGTTTCCTAGTATAGTAGGTCGACCGAGGCATACTGGTGTGATGGTTGGAATGGGGCAAAAGGATGCGTATGTTGGGGATGAAGCTCAGTCAAAACGTGGTATATTAACTTTGAAATATCCCATTGAGCATGGTATAGTGAGCAATTGGGATGATATGGAGAAAATTTGGCATCATACCTTTTACAATGAACTCCGAGTGGCTCCTGAAGAGCACCCTGTCCTACTCACTGAAGCACCTCTGAACCCAAAGGCAAATCGTGAAAAAATGACCCAAATCATGTTCGAAACCTTCAACACTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGTGGACGCACAACTGGTATTGTTTTGGATTCTGGAGACGGTGTCAGTCACACTGTCCCAATTTACGAGGGGTATGCTCTCCCCCATGCCATACTCCGTCTTGACCTTGCTGGCCGTGACCTCACTGATGCCCTTATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACTACAGCTGAGCGTGAAATTGTGAGGGATATGAAGGAAAAACTAGCATATATTGCCCTTGACTTTGAGCAGGAACTTGAAAATTCCAAGACTGGTTCATCTGTTGAGAAGAGTTATGAACTGCCTGATGGGCAGGTAATCACAATTGGTGCAGAACGTTTTCGATGTCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATCCACGAAACAACATATAACTCCATCATGAAATGTGATGTTGATATCAGGAAGGATCTGTATGGAAATATTGTTCTTAGTGGTGGATCAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAGGAAATTACTGCATTAGCCCCTAGCAGCATGAAAATAAAGGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTGGCCTCCCTCAGCACGTTTCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCTGGTCCATCCATTGTGCACAGGAAATGCTTCTGA | 1134 | 45.94 | MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDFEQELENSKTGSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 17888505 | 17894268 | + | Lsi10G013740.1 | Lsi10g01374 | 672931 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi10g01374 | 377 | Gene3D | - | 10 | 371 | - | - | |
| Lsi10g01374 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
| Lsi10g01374 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
| Lsi10g01374 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
| Lsi10g01374 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
| Lsi10g01374 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
| Lsi10g01374 | 377 | PANTHER | ACTIN | 1 | 376 | IPR004000 | - | |
| Lsi10g01374 | 377 | Gene3D | - | 140 | 340 | - | - | |
| Lsi10g01374 | 377 | PANTHER | ACTIN 3 | 1 | 376 | - | - | |
| Lsi10g01374 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
| Lsi10g01374 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
| Lsi10g01374 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
| Lsi10g01374 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
| Lsi10g01374 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
| Lsi10g01374 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
| Lsi10g01374 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
| Lsi10g01374 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
| Lsi10g01374 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
| Lsi10g01374 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00810 | Lsi-Chr3:12156301 | Lsi10g01374 | Lsi-Chr10:17888505 | 0 | dispersed | |
| Lsi03g01737 | Lsi-Chr3:28750428 | Lsi10g01374 | Lsi-Chr10:17888505 | 3.68E-106 | dispersed | |
| Lsi10g00709 | Lsi-Chr10:9906107 | Lsi10g01374 | Lsi-Chr10:17888505 | 0 | dispersed | |
| Lsi02g02566 | Lsi-Chr2:32130208 | Lsi10g01374 | Lsi-Chr10:17888505 | 2.52E-68 | transposed | |
| Lsi06g01342 | Lsi-Chr6:24001247 | Lsi10g01374 | Lsi-Chr10:17888505 | 3.05E-43 | transposed | |
| Lsi01g01425 | Lsi-Chr1:12390072 | Lsi10g01374 | Lsi-Chr10:17888505 | 0 | wgd | |
| Lsi10g01374 | Lsi-Chr10:17888505 | Lsi02g01634 | Lsi-Chr2:22218446 | 0 | wgd | |
| Lsi10g01374 | Lsi-Chr10:17888505 | Lsi04g00880 | Lsi-Chr4:8665301 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi10g01374 | K10355 | - | csin:114318813 | 751.51 |