Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01376 ATGGGTAACGGGATTGGGAAGCTCGGCGTTTGCTTCACCGGAATCAGCGACGGTAGGCGGCAGCCGGATATTTCCGTTCTGTTAACAAATCCACTAGATGAAGGACTGGGACACTCGTTTTGCTATGTCCGGCCGGATCCCTTGAGACTTTCGTCATCAAAAGTTCATTCTGAAGAAACCACCACTTTCCGATCAATCTCCGGCGCCTCTGTAAGTGCAAATACATCAACGCCTCTTTCTACTGCTCTTGTTGATCTGTATTCATACAATAGCATTGATCGAGCGGCGGCGTTTGAGAGTTCAACTTCTTTCGCTTCAATCCCTTTACAGCCGATCCCTAGAAACATGATAAATTCGGGTCCGATTTCGGGGAATTTCAATGGAATCCCCTGTTCTGGGCCTTTGGAAAGAGGGTTTTTATCGGGTCCAATTGAGCGAGGGTTTATGTCGGGTCCACTGGATCGGGGGATTTTTTCGGGTCCTCTTGATAATTCTACATCCACTGAATTTCAGAGGAGTTTTTCTCATGGTGGTGGGTTTAATTCCAGATCTAGATCAAGGAAAAGCCGGTTAATTCGAATTCTGAGAACTGCAATTTCGAAGTCGATTCATCGAGGGCAAAATTCCATAGTGGCCCCGATTAAAGCGGTTAAAGAACCCGATTGGATCGTCTTGCCCGAGAAGCATAATGAGAATTTGACTGTGAGTAGTTTGAATTTCAGTAGCGAAGGGAGTTTGGAGGATGACGATTCAATGGAAAGCCAAAATCTGCAGTGGGCTCAAGGAAAAGCAGGGGAAGATCGAGTTCATGTTGTGGTTTCTGAAGAACATGGATGGGTTTTCGTTGGGATTTATGATGGATTTAACGGTCCTGATGCTCCTGATTATCTCTTGTCCAATTTATATTGCTCTGTTCATAAAGAACTCAAAGGTTTGTTATGGGACGAAAAGCTCGATTCTGCCGGTGTCGCCGCTCCGGCAACTTCCCCTGTTCGTTATGAGAATCCATGTTCGGAAACAAGAGATTTGGGGAGGAATCGAGTGAGTGATGCTTGTTCTCAGTGTGTAGAACAAGAGAATCATCCTTGTGTTAGTGGAGATGGGAATTCTGGATTGAATTCAAGGAAAAGAAAAGGTAAGAATTTAAGAGGAAAGTTTAGAGGAGCTGCTGAGAAGTGGGAGGATAATCAACGGCGGTGGAAGTGCGAATGGGACCGAGAAAGATTAGAACTCGATCGGAGGTTAAAGGAGCAGTTGAATCGATCGGGATCGAATGGTTCGAGGTCGATTAATCATTCGGATGTTCTCAAAGCACTGTCCCAAGCATTGAAGAAAACAGAGGAGGCCTATTTGGATATTGCAGACAAGATGCTTGATGAAAATCCTGAACTAGCTTTGATGGGTTCTTGTGTGCTGGTGATGCTAATGAAAGGAGATGATGTTTATGTGATGAATGTTGGCGACAGTCGAGCGGTTTTAGCGCAGAAGGCAGAGCCCGATTTTTGGCTCGGGAAGATTCGACAAGACTTGGAGAGGATTAATGAAGAGCCAGTTCATGACATTGAAGCATTAGATTGTGATAGAGCATTCACTTCTGCTAACCTTACTGCTTTTCAGCTTTCCATGGATCACAGTACCAGTGTTAATGAGGAAGTTCAGAGAATAAAAAATGAACACCCTGATGATGCTGGTGCCGTGATGAACGATCGTGTCAAAGGCTCGTTGAAGGTTACTCGAGCATTCGGTGCTGGTTTCCTCAAACAGCCTAAATGGAACAATGCATTGTTGGAAATGTTCAGAATCGACTACGTCGGGAGATCACCATACATCAATTGTTTACCATCTCTCTACCACCATAGATTGGGACCAAAAGACAGGTTTTTGATACTATCATCTGATGGACTCTACCAATACTTCACAAACGAAGAAGCTGTTTCTGAAGTCGAACTTTTCATCACATTACAACCCGAAGGAGACCCGGCTCAACATCTGGTTGAATTACTGCTATTTCGGGCTGCAAAGAGAGCTGGTATGGATTTCCACGAGTTACTCGAAATACCACAAGGCGATCGGAGGAAGTACCACGACGATGTATCGATCATTGTAATATCATTAGAAGGAAGGATATGGAGATCGTGTGTATAA 2145 44.52 MGNGIGKLGVCFTGISDGRRQPDISVLLTNPLDEGLGHSFCYVRPDPLRLSSSKVHSEETTTFRSISGASVSANTSTPLSTALVDLYSYNSIDRAAAFESSTSFASIPLQPIPRNMINSGPISGNFNGIPCSGPLERGFLSGPIERGFMSGPLDRGIFSGPLDNSTSTEFQRSFSHGGGFNSRSRSRKSRLIRILRTAISKSIHRGQNSIVAPIKAVKEPDWIVLPEKHNENLTVSSLNFSSEGSLEDDDSMESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYCSVHKELKGLLWDEKLDSAGVAAPATSPVRYENPCSETRDLGRNRVSDACSQCVEQENHPCVSGDGNSGLNSRKRKGKNLRGKFRGAAEKWEDNQRRWKCEWDRERLELDRRLKEQLNRSGSNGSRSINHSDVLKALSQALKKTEEAYLDIADKMLDENPELALMGSCVLVMLMKGDDVYVMNVGDSRAVLAQKAEPDFWLGKIRQDLERINEEPVHDIEALDCDRAFTSANLTAFQLSMDHSTSVNEEVQRIKNEHPDDAGAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGRSPYINCLPSLYHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFITLQPEGDPAQHLVELLLFRAAKRAGMDFHELLEIPQGDRRKYHDDVSIIVISLEGRIWRSCV 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17901763 17904832 - Lsi10G013760.1 Lsi10g01376 672933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01376 714 PANTHER - 12 714 - -
Lsi10g01376 714 ProSiteProfiles PPM-type phosphatase domain profile. 249 705 IPR001932 -
Lsi10g01376 714 PANTHER PROTEIN PHOSPHATASE 2C 12 714 IPR015655 GO:0004722|GO:0006470
Lsi10g01376 714 SUPERFAMILY PP2C-like 263 706 IPR036457 -
Lsi10g01376 714 SMART PP2C_4 250 703 IPR001932 -
Lsi10g01376 714 Coils Coil 436 456 - -
Lsi10g01376 714 CDD PP2Cc 431 705 IPR001932 -
Lsi10g01376 714 Gene3D - 227 710 IPR036457 -
Lsi10g01376 714 Pfam Protein phosphatase 2C 434 655 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01376 Lsi-Chr10:17901763 Lsi07g01082 Lsi-Chr7:16190074 3.78E-36 dispersed
Lsi07g01218 Lsi-Chr7:17726057 Lsi10g01376 Lsi-Chr10:17901763 3.86E-47 transposed
Lsi01g01428 Lsi-Chr1:12411139 Lsi10g01376 Lsi-Chr10:17901763 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01376 - - csv:101222644 1331.24