Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01386 ATGGCCACTATCATTTCTCTCTGCATTGCCTCCCTTCTCTCATTTTCCCTACTTGTCGAAGCCAGAATCCCCGGAATTTACTCCGGCGGCCCATGGCAGAGCGCCCACGCCACTTTCTACGGCGGCGCCGATGCTTCCGGCACCATGGGTGGAGCTTGTGGGTATGGGAATTTGTACAGCCAAGGCTATGGCGTGAACACGGCGGCGCTCAGTACCGCGCTGTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGTGCTAATGACCCAAGATGGTGTCATTCCGGTAGCCCCTCGATCTTGGTTACTGCCACTAATTTCTGCCCGCCGAACTACGCTCTTCCCAACGACAATGGCGGTTGGTGTAACCCTCCCCGGACTCACTTCGATCTCGCCATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTTTCTTACCGCCGAGTGCCATGCCGGAAGCAAGGAGGAATCAGGTTCACAATCAACGGTTTCCGTTACTTCAATTTGGTTCTAATCACCAACGTGGCAGGTGCAGGGGATATCGTGAGGGTTAGCGTTAAAGGAACAAGAACCGGGTGGATGAGCTTAACAAGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTTTTAGTGGGCCAGGCTCTTTCTTTTAGAGTTACCGGCAGTGACCGACGAACCTCAACGTCATGGAACATAGTCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTTTAA 777 53.28 MATIISLCIASLLSFSLLVEARIPGIYSGGPWQSAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17970338 17972110 - Lsi10G013860.1 Lsi10g01386 672943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01386 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Lsi10g01386 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Lsi10g01386 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Lsi10g01386 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Lsi10g01386 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Lsi10g01386 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Lsi10g01386 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Lsi10g01386 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Lsi10g01386 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Lsi10g01386 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Lsi10g01386 258 PANTHER EXPANSIN-A15 5 257 IPR002963 GO:0009664
Lsi10g01386 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Lsi10g01386 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Lsi10g01386 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Lsi10g01386 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Lsi10g01386 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Lsi10g01386 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Lsi10g01386 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Lsi10g01386 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Lsi10g01386 258 Gene3D - 22 160 IPR036908 -
Lsi10g01386 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Lsi10g01386 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Lsi10g01386 258 Gene3D - 164 256 IPR036749 -
Lsi10g01386 258 SMART dpbb_1 67 154 IPR007112 -
Lsi10g01386 258 PANTHER EXPANSIN 5 257 - -
Lsi10g01386 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01431 Lsi-Chr1:12461124 Lsi10g01386 Lsi-Chr10:17970338 1.18E-97 dispersed
Lsi04g00406 Lsi-Chr4:3973635 Lsi10g01386 Lsi-Chr10:17970338 3.70E-126 dispersed
Lsi10g01386 Lsi-Chr10:17970338 Lsi11g00969 Lsi-Chr11:15332481 7.11E-122 dispersed
Lsi01g01287 Lsi-Chr1:11126023 Lsi10g01386 Lsi-Chr10:17970338 6.94E-115 transposed
Lsi09g00897 Lsi-Chr9:10675872 Lsi10g01386 Lsi-Chr10:17970338 8.06E-91 transposed
Lsi11g01308 Lsi-Chr11:21684185 Lsi10g01386 Lsi-Chr10:17970338 2.45E-92 transposed
Lsi01g01430 Lsi-Chr1:12459638 Lsi10g01386 Lsi-Chr10:17970338 1.01E-64 wgd
Lsi10g01386 Lsi-Chr10:17970338 Lsi02g01353 Lsi-Chr2:18139244 5.81E-172 wgd
Lsi10g01386 Lsi-Chr10:17970338 Lsi02g01625 Lsi-Chr2:22146003 2.23E-88 wgd
Lsi10g01386 Lsi-Chr10:17970338 Lsi04g00889 Lsi-Chr4:8841940 8.26E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01386 - - csv:101203979 532.332