Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01389 ATGGATCATCCAAATCTTAACGATTTCCCAGATCGTGGAACTGATTATCAAACCCCTTTAACCCATTTACACGATCAAACTTCTTTACCCACTTCATTTCTATACCCAGAACTCGAAAACAGTTTTGTATTCAACAACCCATCTCCAGATCTTGTTCCTTTCGTCGATTTTAACAATTATTCAGCGGCGGAGTTGAAATTGGGCGAAGGTGGTGTTGGGGTGGCTTCAGGGCGTAGCCCTGGTGGCGATTCTTCCTCAGATGAGAGTGATTTCAGGGAAAGTGTTCTCAAGTATATAAGTCAAATGCTTATGGAAGAGAATTTGGAGGAGAAGCCTTGTATGTTTTATGATCCTTTGGGGCTTGAAGTTACTGAGAAATCATTCTATGATGCTCTTGGTAAGAATTACCCTCCTTCACCTAACCAACCTCCTCTCTTGGATTGTGACAGTGATCTTGCTAGTACTAATGTTAGTGTTGGCAATAGCAATTCGCCTGACTCGCAATGGGTTGTTGATCCTGGAGAACATAAGTCCTCTGTACTTTCAAGGCCTGTTCTTAGTAACCCATATCAAAACAGTCATGAGCTTGTCAATGAGTTGTTGGCACAGAATATCTTTAGTGATAGCACATCTATATTGCAATATCAAAAAGGGTTGGAGGAGGCAAGTAAGTTTCTTCCAGTAGGTACTCAGTTGAATATTGATCTTGGCAGTGGCATGGTGCCAGGAGTAGTTTCTAAGAGGGAGAATTCGCCTAATGAATCGAAGAGAAGGAAGAATCGTGAACGTGAAGATGTAGACTTGGATTCGGAAGAAGGGAGGAGAAACAAGCATTCAACCATTTATGTGGGTGAGGAAGAATTATCTGAGATGTTTGATAAGGTTTTACTTCATGATTGTGGAAATGAGACTGCTGCAAATGGAGGGTGTGAAAATTTGCAGTATAACGGTCAACTTCAAGGATCGATTACTGCGAAAGCTCGGGAAAAGAAACAGGAAAAGAGAAAGGACTCTGTGGATCTGAGAAATCTTCTGATATTATGTGCACAAGCTGTGTCTTCTGATGATCGTCGGATTGCATATGAAATACTTAAACAGATTAGGCAGCATTCTACAATCATTGGGGATGGTTCTCAAAGAATGGCTCATTTCTTTGCTAATGCTCTTGAGGCTCGCATGGTTGGCAATGGCACAGGAAGTAGAATCTACTATGAATCACTAGCTCAAAGCAAAATTTCAGCTGCTGATATGTTGAAAGCGTACCAAGCTCACCTATCATCCTGCCCTTTTAAGAAGCTCTCGCTCTTTTTCATGATTAAAATGATTTTGAAGGTTGCTGAGAATGCTAAAAGTCTTCATGTTATTGATTTTGGCATTTGTTATGGTTTCCTATGGCCAATGTTAATTCAGTTTCTTGCACAACTACCTGATGGTCCTCCCAATCTACGCATTACTGGTATAGATTATCCTCTACCAGGATTTCGTCCAGCAGAAAAGATTGATGAGTCAGGCCGTCGTTTGGGAAAATACTGTGAGCGGTTTAAAGTTCCTTTTCAATATCAATCCATCCCATCAAATAACTGGGAAACTATCCGAGTTGAGGACTTAAAGCTCGATAGCAATGACGTGCTTGTTGTGAACTGTTTCTACAGGTTTAACAACCTACTCGACGAAACTGTTGAAGAAAGTAGTCCACGGGACGCTGTTCTGCGTTTAATAAGGAAGATGAATCCAAGCATCTTTGTACATTCTGTGGTTAATGGATCCTACCATGCACCATTCTTCATAACACGATTCAGGGAAGCACTCTTCCACTTCTCTGCATTATATGATGCTCTCGACGTCAATTTACCTCGTGACAGCGAGGAGAGAATGATGCTAGAGAGAGAGTTTCTCGGTCGCCAAATTATGAATGTAGTAGCATGTGAGGGTGTCCAAAGGGTTGAGAGGCCTGAAACCTATAAGCAGTGGCAAGTTAGATGTATGAGGGCAGGTTTCAGGCAGCGTCCTTTAGACAAAGAGATCATGAACAAGTTTAGGAGCAAATTAACATCCTATTACCACAAAGATTTTGTACTAGATGAAGATGAAGGTTGGATGCTTCAAGGATGGAAAGGCCGGATTGTCTATGCTTCTTGTTGCTGGGTGCCAGCATAG 2157 41.63 MDHPNLNDFPDRGTDYQTPLTHLHDQTSLPTSFLYPELENSFVFNNPSPDLVPFVDFNNYSAAELKLGEGGVGVASGRSPGGDSSSDESDFRESVLKYISQMLMEENLEEKPCMFYDPLGLEVTEKSFYDALGKNYPPSPNQPPLLDCDSDLASTNVSVGNSNSPDSQWVVDPGEHKSSVLSRPVLSNPYQNSHELVNELLAQNIFSDSTSILQYQKGLEEASKFLPVGTQLNIDLGSGMVPGVVSKRENSPNESKRRKNREREDVDLDSEEGRRNKHSTIYVGEEELSEMFDKVLLHDCGNETAANGGCENLQYNGQLQGSITAKAREKKQEKRKDSVDLRNLLILCAQAVSSDDRRIAYEILKQIRQHSTIIGDGSQRMAHFFANALEARMVGNGTGSRIYYESLAQSKISAADMLKAYQAHLSSCPFKKLSLFFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLAQLPDGPPNLRITGIDYPLPGFRPAEKIDESGRRLGKYCERFKVPFQYQSIPSNNWETIRVEDLKLDSNDVLVVNCFYRFNNLLDETVEESSPRDAVLRLIRKMNPSIFVHSVVNGSYHAPFFITRFREALFHFSALYDALDVNLPRDSEERMMLEREFLGRQIMNVVACEGVQRVERPETYKQWQVRCMRAGFRQRPLDKEIMNKFRSKLTSYYHKDFVLDEDEGWMLQGWKGRIVYASCCWVPA 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18010515 18012671 + Lsi10G013890.1 Lsi10g01389 672946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01389 718 MobiDBLite consensus disorder prediction 70 91 - -
Lsi10g01389 718 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 197 717 IPR005202 -
Lsi10g01389 718 MobiDBLite consensus disorder prediction 250 275 - -
Lsi10g01389 718 MobiDBLite consensus disorder prediction 237 275 - -
Lsi10g01389 718 PANTHER SCARECROW-LIKE PROTEIN 34 76 143 - -
Lsi10g01389 718 MobiDBLite consensus disorder prediction 156 176 - -
Lsi10g01389 718 ProSiteProfiles GRAS family profile. 332 716 IPR005202 -
Lsi10g01389 718 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 76 143 IPR005202 -
Lsi10g01389 718 PANTHER SCARECROW-LIKE PROTEIN 34 197 717 - -
Lsi10g01389 718 Pfam GRAS domain family 341 715 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01389 Lsi-Chr10:18010515 Lsi10g00057 Lsi-Chr10:977937 8.58E-66 dispersed
Lsi10g01389 Lsi-Chr10:18010515 Lsi02g01346 Lsi-Chr2:17994281 0 wgd
Lsi10g01389 Lsi-Chr10:18010515 Lsi03g02114 Lsi-Chr3:32371065 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26089 PF03514 GRAS 6.00E-103 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01389 - - csv:101203568 1177.93