Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01422 ATGGCGTCAACTCCGAGATCTCTCTGCAACAAATTCTTCGCTCTTTTACTCCTCATTGTCCACGTCGGCTGCTTCCTTCTCACCACCGCCGACCACCGTCGCCGCCGCCAACACCACCACCGCCCTACCCCTTCCTGTTTGAAGCCACACAAAATCAAATCCCTAACTTCTTCCTTTTCATTTCTCAAACGAATCTTCTCCTCCAAGTCCTGCAAAATGGCAATCGAAACCGCTCGCTCGCCTTCCACACCTGCTAGATCATCGCAGCACTCCATCGTTACACTCATCCAACCGGAGATTTCTCCTCCGACGATTCCGGAGACTGATCCTCCTACCGGAACGTCGCAGGATTCAGATATCACTACGGCAGAGACGAATCAATTTTTTCCTCTTCGTAACGATATCTTCCCTTGTACTGCTTGTGGTGAGATTTTCCCCAAGGCGCAACTCCTCGAACAGCATCAATCGATTAAACACGCCGTGTCGGAGCTTGTCGATTCGGATTCTGGAAAGAATATTGTTCGGATTATTTTCGAAACTGGATGGACGAGTAGAGAAAAAAGCCCTAAAATCCTTCGAATCTTGAAAATCCACAATAGTCAGAAGATTCTTTCCAGATTTGAAGAGTATAGAGAGATGGTGAAGGCGAAAGCGGCTAGAAACGGCGGCGTAAAGCGGCGGGATGAGCGGTGCATTGCCGACGGGAACGAGCTTCTGAGGTTTCACTGTTCCACGTTTTTGTGCGATTTGGGGCAAAATGGTAATTCCAGCCTTTGCGGGCAGCAATTTTGTAGTATTTGTGGTATAATTAAATCGGGATTCTCACACAAGTTGGATGGAATTTCGACGCTATCGAGTAGCTGGAGGGCACACGTGGCAATCCCTGAGGACATCGAAGAGGAATTCGAGTTTCTGAACGTAAAGCGGGCGATTTTGGTTTGTCGGGTTGTGGCGGGTCGGATCGGATCAGACGCCGATGAGCCGGAAAAAGACGGCGGAGGGTTTGACTCCGTCGTAGGACGGAGTGGGAGTGGGGCCCAGACCACGTTGGATGAAGAAGAGCTGTTGGTTTTCAATCCGAGGGCTGTACTCCCCTGCTTCGCGATTGTATACGAAATCTGA 1122 49.91 MASTPRSLCNKFFALLLLIVHVGCFLLTTADHRRRRQHHHRPTPSCLKPHKIKSLTSSFSFLKRIFSSKSCKMAIETARSPSTPARSSQHSIVTLIQPEISPPTIPETDPPTGTSQDSDITTAETNQFFPLRNDIFPCTACGEIFPKAQLLEQHQSIKHAVSELVDSDSGKNIVRIIFETGWTSREKSPKILRILKIHNSQKILSRFEEYREMVKAKAARNGGVKRRDERCIADGNELLRFHCSTFLCDLGQNGNSSLCGQQFCSICGIIKSGFSHKLDGISTLSSSWRAHVAIPEDIEEEFEFLNVKRAILVCRVVAGRIGSDADEPEKDGGGFDSVVGRSGSGAQTTLDEEELLVFNPRAVLPCFAIVYEI 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18313565 18314686 + Lsi10G014220.1 Lsi10g01422 672979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01422 373 ProSitePatterns Zinc finger C2H2 type domain signature. 138 159 IPR013087 -
Lsi10g01422 373 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 6 371 - -
Lsi10g01422 373 SUPERFAMILY ADP-ribosylation 161 372 - -
Lsi10g01422 373 PANTHER NUCLEIC ACID BINDING PROTEIN 6 371 - -
Lsi10g01422 373 Gene3D - 178 373 - -
Lsi10g01422 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 164 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00407 Lsi-Chr9:4297045 Lsi10g01422 Lsi-Chr10:18313565 2.88E-37 dispersed
Lsi09g01047 Lsi-Chr9:15707830 Lsi10g01422 Lsi-Chr10:18313565 1.91E-63 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26092 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01422 - - csv:101205506 620.928