Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01424 ATGCCAACCATTACTCGAGCAAATCACTGTAAGATCGAGAGTGGAGCGAATTTGAACGATGTTATGGTTGCGAGAGTGACTGATGGAGGTTCTGTAATGGAAACCACTCCTCCGAAGCGGAAACTGAGATCCAGTGATGCACAGAGGCAACAAAGCCCTGTCTCTGCGCCGGTGAATTGGAAATCGCCTCGTCGGCGCCTTAATTCGAGTCCAAAAAGCCCTCCACAGAGCGATGGGAAAACGTTTAATGGTGGCTTGTCCAACTTTCATAGTTCACCGATAAGATGCTTGTTGAAGGACCTTATTGTCAAACCAGATTGGAATCCTAAAGATACTGAACATATAAAAACAGCAAAAGAAGCATTGCACGTATCGACAGCACCAACTACAATCATGTGCCGTGAAGACGAACAAAGTAAAATCTTCAATTTCTGCAAGGCTTGTGTGGAGCAAGAAAAAGCTGGTAGTCTGTATGTTTGCGGGTGTCCAGGAACTGGCAAATCTTTGTCCATGGAAAAAGTGAAAGAGCAGTTGGCCGCTTGGGTGAAAGAGATTCAATTCATCACACATTCTTCATGCTACCAGTCAGGTCTTCAGCTTCCAGATATTTTGTCCATAAACTGCACTTCGTTAGCTAATACATCCGATATTTTCATTAAGATGATGGGTGAAGCCCAACCACAAAAGAAAAGGAATGGCTCTTTAACACCCTTGCAACATCTTCAACGCCTGTACTCCCAAAAGGCAGAGTCATCTTGCATGAAGATGATGTTGATAATAGCTGATGAATTGGATTATTTAATTACCAAGGATAAAGCAGTGCTACATGATCTGTTCATGCTCACAACTTTCCCATTTTCAAGATGTATTTTGATAGGAATTGCAAATGCTATTGACTTAGCAGATCGCTTTCTTCCAAGACTTCGGGCATTGAATTGCAAACCTCAGGTCGTAACTTATAGGGCATATTCCAAGGAACAGATCCTCAAGATTCTTCAACAAAGGTTAATTGTGCTTCCTTTCATTGTCTTTCAGTCGCCAGCACTGGAGCTTTGTGCTAGAAAAGTTGCAGCTGTATCTGGAGATATGAGAAAAGCTCTCTGTATTTGCAGGAATGCAATTGAATTATTGGAGGTGGAACTCAAAGCATCCTCTAAGGAGCTGAACCATAATGACGCATGTGATGCTTCAGCACCACCTGAGCTTGTCAAAAGACAAGAGTCTCAAATTGTAAGGTTGGACCATATGGCTATTGCCTTATCCAAGACTTTTAAATCACCAGCAGTGGAAACCATACAATCTCTTCCTCAGCATCAACAGGGGCTTCTCAAACTTGGACAATCTCGAGATGATAAAATGAGACGGGTGTTGTTGAAAGTTGATGAAGCTGATGTCATGGAATACGCTTCTTTCGAAATTGCCTACAATAAATTTGCCGTTCTCCAGGACATCGAGTATAGATTGGTGTGGTGA 1473 42.43 MPTITRANHCKIESGANLNDVMVARVTDGGSVMETTPPKRKLRSSDAQRQQSPVSAPVNWKSPRRRLNSSPKSPPQSDGKTFNGGLSNFHSSPIRCLLKDLIVKPDWNPKDTEHIKTAKEALHVSTAPTTIMCREDEQSKIFNFCKACVEQEKAGSLYVCGCPGTGKSLSMEKVKEQLAAWVKEIQFITHSSCYQSGLQLPDILSINCTSLANTSDIFIKMMGEAQPQKKRNGSLTPLQHLQRLYSQKAESSCMKMMLIIADELDYLITKDKAVLHDLFMLTTFPFSRCILIGIANAIDLADRFLPRLRALNCKPQVVTYRAYSKEQILKILQQRLIVLPFIVFQSPALELCARKVAAVSGDMRKALCICRNAIELLEVELKASSKELNHNDACDASAPPELVKRQESQIVRLDHMAIALSKTFKSPAVETIQSLPQHQQGLLKLGQSRDDKMRRVLLKVDEADVMEYASFEIAYNKFAVLQDIEYRLVW 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18342365 18348570 + Lsi10G014240.1 Lsi10g01424 672981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01424 490 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 30 441 - -
Lsi10g01424 490 MobiDBLite consensus disorder prediction 29 84 - -
Lsi10g01424 490 Pfam AAA lid domain 347 379 IPR041083 -
Lsi10g01424 490 MobiDBLite consensus disorder prediction 47 84 - -
Lsi10g01424 490 CDD AAA 149 312 - -
Lsi10g01424 490 Gene3D - 111 312 IPR027417 -
Lsi10g01424 490 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 30 441 - -
Lsi10g01424 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 380 IPR027417 -
Lsi10g01424 490 Pfam AAA domain 152 282 IPR003593 -
Lsi10g01424 490 Gene3D - 313 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00009 Lsi-Chr8:230330 Lsi10g01424 Lsi-Chr10:18342365 9.33E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01424 K02213 - csv:101205741 710.679