Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01438 ATGATGTGCAATGGTTGCAATAGGAAATCTGCAAGCCCTAACTCCGTGATGGACGGCAGATTTAAACGAGGGGGATTGGGATTTTGTATCTCTGTTTTGCTTGAATTTTCAGCTACAGATGATCTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGCCATAATATTGATGAGGCAAGCTTGTGGTATGGGAGGATTTTTGGTTCAAAAAAGATGGGGTATGAAGAAAGGACTCCTCTTATGGTTGCAGCCATGTTTGGGAGTATGAATGTTCTGTCTTATATCCTTCACAGTGGTCGTGTCGATGTTAATCGAGCTTGTGGTTCAGATGGCGCAACGACCCTCCATTGCGCTGTTGCTGGTGGTTCTGCTGTTGCAGATCAGGTTGTCAAACTCTTGCTTGACGCTTCTGCTGATGTGAGTGCTGTCGATGCAAACGGTAACCGGCCTGGTGATTTGATTGCTCCTGATTTTACTTCAGCCTCCCATTCAAGGAAAAAAGCATTACAACAATTGCTAAATGGTCGTGAAGAAGCCTTTGGTTCATCTGAGTCGATATTTTACGAGAGAGAAACGCAGGAGCCATTGGAGCTATCGACCCCTAGGGCTTCAAGAGATGGAATGGAGAAGAAAGAGTATCCAGTCGATCTCTCACTTCCAGACATCAAGAACGGAATCTATAGCACAGATGAATTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCTCATGATTGGACAGAGTGCCCATTTGTTCACCCTGGGGAGAATGCAAGGAGGCGGGATCCGAGGAAATACCATTACAGCTGCGTCCCGTGTCCAGAATTCAGAAAGGGAACATGTAGACAGGGGGATGCCTGTGAATATGCTCATGGAATTTTTGAATGTTGGCTCCATCCTGCTCAATATCGTACCCGTCTTTGCAAGGATGAAACTGGATGCATCCGAAAAGTCTGTTTCTTTGCTCACAAACCAGAAGAGCTCCGCCCCTTGTATGCTTCAACCGGTTCTGCTGTACTGTCTCCAAGATCAATATGTGGTTCTTCACTAGACATTGCGTCGATTAGCTCACTTACCCTTGGTTCTCCTTCAGCTCTGATCCCTCCTTCATCAACTCCACCTTTAACTCCTTCTGGAGTTTCTTCTCCAATGGGTGGAACCATGTGGCAGACTCAATGTAATATAGCGCCCCCGACCTTGCAGCTTCCAGGTAGCAGACTAAAGGCTTCTTTGAGCGCGAGAGACATTGATTTAGACGTTGAGTTACTTGGTCTCGAAAGTCAGCGACGTAGACAACAACAGCTAATGGATGAGGTGTCCTGTCTACCTTCCCCTACCAGATGGAACAATGGCTTGCCAACCCCTGCATCTTTTCCATCCCCAAGGAGTAGAAATGGAGAACTGAATGGACTTGGAGGCATGAACCCAGCTAACCTCGAGGACATTTTCGGGTCTGTAGATCCTGCGATTTTGCCTCAATTACAAGGACTTTCATTGGATTCTGTGGGATCTCAGGTACAATCCCCTTCCGGGATTCAGATGCGCCAAAGCTTGAATCAGTCTTTCCTCTCAGGCTATGCCAACAGCATTGGATCCCCTCCTGCAAGGTCGTCTCAACCATCCGTGTCTACTGCAGCTAGCGTTCTGAGTTCTAGGGCTGCTGCTTTTGCCAAGCGTAGCCAGAGCTTTATCGAACGTAGCGTAGTGAGCCGTCATTCTGGACTTTCACCACCAGCTACATCCACATCTGCCATGCCTTTGAACCTGTCTGATTGGGGTTCGCCCGACGGGAAACTAGACTGGGGAATTCGTGGAGAAGAACTCAACAAGTTAAGGAAGTCCGCATCATTTGGGTTCCGAAACAGTTGCACCAGTTCTCTTGCGACTTCCACAATACACGCTGCCACTCTCGAGCCAGACGTGTCATGGGTTCAGTCCCTGGTGAAGGATGCTCCATCCAAAAACGCTGTGCAGATGAGTATGGACGAGCAGCAGCAGCAGCAGCTTTGTCATCTCGACAATGGCGATTCAAATCAAAGGTACATGGAACAGGAGCAGTTAGTTGCTTGA 2082 47.5 MMCNGCNRKSASPNSVMDGRFKRGGLGFCISVLLEFSATDDLIGFRSAVEEDGHNIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSMNVLSYILHSGRVDVNRACGSDGATTLHCAVAGGSAVADQVVKLLLDASADVSAVDANGNRPGDLIAPDFTSASHSRKKALQQLLNGREEAFGSSESIFYERETQEPLELSTPRASRDGMEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCIRKVCFFAHKPEELRPLYASTGSAVLSPRSICGSSLDIASISSLTLGSPSALIPPSSTPPLTPSGVSSPMGGTMWQTQCNIAPPTLQLPGSRLKASLSARDIDLDVELLGLESQRRRQQQLMDEVSCLPSPTRWNNGLPTPASFPSPRSRNGELNGLGGMNPANLEDIFGSVDPAILPQLQGLSLDSVGSQVQSPSGIQMRQSLNQSFLSGYANSIGSPPARSSQPSVSTAASVLSSRAAAFAKRSQSFIERSVVSRHSGLSPPATSTSAMPLNLSDWGSPDGKLDWGIRGEELNKLRKSASFGFRNSCTSSLATSTIHAATLEPDVSWVQSLVKDAPSKNAVQMSMDEQQQQQLCHLDNGDSNQRYMEQEQLVA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18464037 18466118 + Lsi10G014380.1 Lsi10g01438 672995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01438 693 SUPERFAMILY Ankyrin repeat 72 150 IPR036770 -
Lsi10g01438 693 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Lsi10g01438 693 SMART ANK_2a 75 105 IPR002110 GO:0005515
Lsi10g01438 693 SMART ANK_2a 110 142 IPR002110 GO:0005515
Lsi10g01438 693 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Lsi10g01438 693 Pfam Ankyrin repeats (3 copies) 73 143 IPR002110 GO:0005515
Lsi10g01438 693 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Lsi10g01438 693 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Lsi10g01438 693 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Lsi10g01438 693 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Lsi10g01438 693 Gene3D - 46 177 IPR036770 -
Lsi10g01438 693 PANTHER UNKEMPT FAMILY MEMBER 29 691 IPR045234 -
Lsi10g01438 693 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 29 691 - -
Lsi10g01438 693 Gene3D - 272 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00984 Lsi-Chr4:10669560 Lsi10g01438 Lsi-Chr10:18464037 0 dispersed
Lsi07g00121 Lsi-Chr7:1360948 Lsi10g01438 Lsi-Chr10:18464037 2.67E-51 dispersed
Lsi07g00122 Lsi-Chr7:1367872 Lsi10g01438 Lsi-Chr10:18464037 2.67E-51 dispersed
Lsi10g01438 Lsi-Chr10:18464037 Lsi11g00204 Lsi-Chr11:2077559 2.06E-46 dispersed
Lsi10g01438 Lsi-Chr10:18464037 Lsi06g00248 Lsi-Chr6:2788692 3.39E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26093 PF12796 Ank_2 1.40E-06 CL0465 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01438 - - csv:101213761 1257.66