Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01445 ATGGCCGCCTGTCCCACCGACTTCACTCGCGACTCCGCTTGTCGCGACGGACGCGCCGCCGCCCATCTCAAGCTCATCTCCATCTTCCTCATCTTCATCACCAGCGTCATCGGCGTCTCCTCCCCTGTCCTCCTCACTCGCTTCTTCCACGGCAAACCTCTCTACGACAAAGCCATTCTCACCATCAAATGCTTCGCCGCCGGCGTTATTCTCTCCACCTCCCTCGTCCACGTCCTCCCCGACGCCTTCGACGCCCTCTCCGACTGCCGCATCGCCTCCCACCACCCCTGGCGGGACTTCCCCTTCTCCGGCCTCGTCACCATGATCGGCGCTCTCATCGCGCTTCTCGTCGACGTTACCGCCACGTCACACGTCGAACACGGTCACTATAATCCGGTGGAGATGAAAACAGGGGAAGATTCCAGCGGGGAAATTGGCCTTCTGGTGGCGGCGGATTCGAAATCGGAGACGGTAGGAGGCGACGGCGGAGGAAGGGAAGAGGAATTAGTGAAAATGAAACAGAAATTAGTATCTCAAGTATTGGAAATTGGGATAATATTTCATTCAGTGATAATCGGAGTAACGATGGGAATGTCCCAGAATCAGTGTACGATTAAGCCGCTTGTTGCTGCTCTTGCTTTTCATCAAATCTTTGAAGGAATGGGCCTTGGCGGATGTTATGACGATAACAATCCTAAAGCTTTGATAATGGAAGGTTTATTGGGATCATTTTCATCTGGGATTCTCATATACATGGCTCTAGTAGATTTAATAGCTGTTGATTTTTTTCACAACAAGATGATGAGCTCAAATCAATGGCTGAAAAAGACTTGTTTTATTGCCTTGTTGCTTGGCTCTGCTTCCATGTCTGTTTTAGCATTGTGGGCTTGA 891 50.95 MAACPTDFTRDSACRDGRAAAHLKLISIFLIFITSVIGVSSPVLLTRFFHGKPLYDKAILTIKCFAAGVILSTSLVHVLPDAFDALSDCRIASHHPWRDFPFSGLVTMIGALIALLVDVTATSHVEHGHYNPVEMKTGEDSSGEIGLLVAADSKSETVGGDGGGREEELVKMKQKLVSQVLEIGIIFHSVIIGVTMGMSQNQCTIKPLVAALAFHQIFEGMGLGGCYDDNNPKALIMEGLLGSFSSGILIYMALVDLIAVDFFHNKMMSSNQWLKKTCFIALLLGSASMSVLALWA 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18536607 18538385 - Lsi10G014450.1 Lsi10g01445 673002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01445 296 PANTHER ZINC/IRON TRANSPORTER 227 296 - -
Lsi10g01445 296 PANTHER ZINC/IRON TRANSPORTER 3 226 - -
Lsi10g01445 296 Pfam ZIP Zinc transporter 228 293 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Lsi10g01445 296 Pfam ZIP Zinc transporter 22 226 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Lsi10g01445 296 TIGRFAM zip: ZIP zinc/iron transport family 11 226 IPR004698 GO:0005385|GO:0016021|GO:0071577
Lsi10g01445 296 PANTHER ZINC TRANSPORTER 6, CHLOROPLASTIC 227 296 - -
Lsi10g01445 296 PANTHER ZINC TRANSPORTER 6, CHLOROPLASTIC 3 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01445 Lsi-Chr10:18536607 Lsi11g01590 Lsi-Chr11:24288182 7.74E-62 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01445 K14709 - csv:101214729 494.967