Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01458 ATGGGAGCCGGTTCATCGCCCTGCGCCTCTTGCAGATTGCTACGGCGGCGCTGCGCAAAAGATTGCATTTTTGCCCCTTATTTCCCTCCCGATGACCCTCTCAAATTCGCCATGGTTCATAAGATCTTCGGCGCCAGCAATGTCAGCAAAATGTTGCAGGAGGTTGCGGTAGAACAGAGAGCGGATGCAGTGAACAGTATGGTATATGAAGCGAGTGCGAGAATGCGAGATCCAGTGTACGGTTGTGTAGGAACAATTTCGTTTCTACAAAACGAAGTGTCTCGATTGGAAATGCAACTCGGGGCAGCGCAAGCGGAGATTTTGACTTTACAAATGCAGCAACAGGTGGCTCCGACGACATTTCCGATGATGACCATGACGACCCAAATGGATCAAGATGATCAAAATCGTGAGATCTTCTCAAATGCTGATTCTTCTAATTTCTTTTTCCAGGAAGAGGAGGATTATTTCCCTCTATGGACT 483 47.83 MGAGSSPCASCRLLRRRCAKDCIFAPYFPPDDPLKFAMVHKIFGASNVSKMLQEVAVEQRADAVNSMVYEASARMRDPVYGCVGTISFLQNEVSRLEMQLGAAQAEILTLQMQQQVAPTTFPMMTMTTQMDQDDQNREIFSNADSSNFFFQEEEDYFPLWT 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18689456 18690261 - Lsi10G014580.1 Lsi10g01458 673015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01458 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 150 - -
Lsi10g01458 161 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lsi10g01458 161 Coils Coil 86 113 - -
Lsi10g01458 161 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lsi10g01458 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01033 Lsi-Chr4:12002599 Lsi10g01458 Lsi-Chr10:18689456 2.29E-47 dispersed
Lsi06g01582 Lsi-Chr6:26226856 Lsi10g01458 Lsi-Chr10:18689456 7.71E-48 dispersed
Lsi10g01458 Lsi-Chr10:18689456 Lsi10g01525 Lsi-Chr10:19619135 4.00E-47 dispersed
Lsi11g01618 Lsi-Chr11:24517061 Lsi10g01458 Lsi-Chr10:18689456 2.12E-44 dispersed
Lsi10g01458 Lsi-Chr10:18689456 Lsi04g01066 Lsi-Chr4:12673905 2.35E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26097 PF03195 LOB 1.00E-39 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01458 - - csv:101207667 233.417