Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01460 ATGGCTACCGAGGCGACCGAAGCCACGACTAAGTTCCAGAGTCCGGATTTTCGCCCGGTACCGTCGCCTCCAGATTTCCATCCCGAGATTGTGGTCTCAGCTCATGATGGTCTTCGGTTCTGGCAGTTCATGATTGCCGGTTCAATAGCTGGGTCTGTTGAGCATATGGGTATGTTTCCTGTTGATACCGTCAAGACCCATATGCAAGCACTTGGTTCTTGTCCAATTAAATCTGTTGGAGTTCGACAAGCCCTTCGGTCAATTTTGAAATCAGAGGGACCTGCTGGGTTTTATCGTGGTATTGGTGCTATGGGTCTTGGAGCTGGACCTGCACATGCTGTGTATTTTACAGTCTACGAGAATTGTAAGAAATTTTTCTCTGGTGGGGATCCTAATAATTCTCTTGCTCACGCTGCTTCTGGCGTCTGTGCAACGGTGGCGAGTGACGCTGTGTTTACACCGATGGATATGGTTAAACAGAGGCTGCAGCTGGGTAATAATCCCTACAAGGGAGTTTTGGATTGTATCAAAAGGGTCCTGAGAGATGAGGGTTTTAAAGCATTTTACGCATCATATAGAACTACAGTGTTAATGAATGCACCATTTACTGCTGTGCATTTTGCTACTTATGAAGCTGCAAAGAGAGGTTTGATGGAGGTTTCGCCAGAGAGTGTAAATGATGAACAGTGGATTGTTCATGCGACAGCAGGCGCTGCTGCTGGAGCCTCAGCTGCACTTGTTACAACGCCACTTGATGTGGTTAAGACTCAATTACAATGTCAGGGCGTATGTGGATGCGATAGATTCAAAAGCGGGTCGATCAGGGATGTTCTTCGGACAATACTCAAGAAGGATGGATATAGAGGGCTTATGAGAGGATGGGTTCCAAGGATGCTCTTTCATGCTCCGGCTGCAGCTATTTGCTGGTCGACATACGAAGCGTTAAAATCCTTCTTCCACGAGCTCAATGGCAACAGCAGCGACAACGAAAACGTGACCTGA 1002 47.31 MATEATEATTKFQSPDFRPVPSPPDFHPEIVVSAHDGLRFWQFMIAGSIAGSVEHMGMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKSEGPAGFYRGIGAMGLGAGPAHAVYFTVYENCKKFFSGGDPNNSLAHAASGVCATVASDAVFTPMDMVKQRLQLGNNPYKGVLDCIKRVLRDEGFKAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESVNDEQWIVHATAGAAAGASAALVTTPLDVVKTQLQCQGVCGCDRFKSGSIRDVLRTILKKDGYRGLMRGWVPRMLFHAPAAAICWSTYEALKSFFHELNGNSSDNENVT 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18705393 18709193 + Lsi10G014600.1 Lsi10g01460 673017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01460 333 Gene3D Mitochondrial carrier domain 168 332 IPR023395 -
Lsi10g01460 333 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085
Lsi10g01460 333 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Lsi10g01460 333 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085
Lsi10g01460 333 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Lsi10g01460 333 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Lsi10g01460 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Lsi10g01460 333 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 5 326 - -
Lsi10g01460 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
Lsi10g01460 333 SUPERFAMILY Mitochondrial carrier 36 314 IPR023395 -
Lsi10g01460 333 PANTHER MITOFERRIN-1-RELATED 5 326 - -
Lsi10g01460 333 Pfam Mitochondrial carrier protein 133 219 IPR018108 -
Lsi10g01460 333 Pfam Mitochondrial carrier protein 38 127 IPR018108 -
Lsi10g01460 333 Pfam Mitochondrial carrier protein 229 320 IPR018108 -
Lsi10g01460 333 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Lsi10g01460 333 Gene3D Mitochondrial carrier domain 22 167 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01574 Lsi-Chr1:13942708 Lsi10g01460 Lsi-Chr10:18705393 4.66E-12 dispersed
Lsi04g01400 Lsi-Chr4:21784232 Lsi10g01460 Lsi-Chr10:18705393 2.81E-22 dispersed
Lsi05g01397 Lsi-Chr5:21810658 Lsi10g01460 Lsi-Chr10:18705393 1.10E-27 dispersed
Lsi08g00534 Lsi-Chr8:13292505 Lsi10g01460 Lsi-Chr10:18705393 2.64E-09 dispersed
Lsi10g00675 Lsi-Chr10:9364119 Lsi10g01460 Lsi-Chr10:18705393 1.84E-06 dispersed
Lsi10g01460 Lsi-Chr10:18705393 Lsi05g02083 Lsi-Chr5:27707662 4.83E-30 dispersed
Lsi11g01295 Lsi-Chr11:21591833 Lsi10g01460 Lsi-Chr10:18705393 1.25E-16 dispersed
Lsi10g01460 Lsi-Chr10:18705393 Lsi08g01194 Lsi-Chr8:20513216 7.80E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01460 K15113 - csv:101215924 645.966