Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01460 | ATGGCTACCGAGGCGACCGAAGCCACGACTAAGTTCCAGAGTCCGGATTTTCGCCCGGTACCGTCGCCTCCAGATTTCCATCCCGAGATTGTGGTCTCAGCTCATGATGGTCTTCGGTTCTGGCAGTTCATGATTGCCGGTTCAATAGCTGGGTCTGTTGAGCATATGGGTATGTTTCCTGTTGATACCGTCAAGACCCATATGCAAGCACTTGGTTCTTGTCCAATTAAATCTGTTGGAGTTCGACAAGCCCTTCGGTCAATTTTGAAATCAGAGGGACCTGCTGGGTTTTATCGTGGTATTGGTGCTATGGGTCTTGGAGCTGGACCTGCACATGCTGTGTATTTTACAGTCTACGAGAATTGTAAGAAATTTTTCTCTGGTGGGGATCCTAATAATTCTCTTGCTCACGCTGCTTCTGGCGTCTGTGCAACGGTGGCGAGTGACGCTGTGTTTACACCGATGGATATGGTTAAACAGAGGCTGCAGCTGGGTAATAATCCCTACAAGGGAGTTTTGGATTGTATCAAAAGGGTCCTGAGAGATGAGGGTTTTAAAGCATTTTACGCATCATATAGAACTACAGTGTTAATGAATGCACCATTTACTGCTGTGCATTTTGCTACTTATGAAGCTGCAAAGAGAGGTTTGATGGAGGTTTCGCCAGAGAGTGTAAATGATGAACAGTGGATTGTTCATGCGACAGCAGGCGCTGCTGCTGGAGCCTCAGCTGCACTTGTTACAACGCCACTTGATGTGGTTAAGACTCAATTACAATGTCAGGGCGTATGTGGATGCGATAGATTCAAAAGCGGGTCGATCAGGGATGTTCTTCGGACAATACTCAAGAAGGATGGATATAGAGGGCTTATGAGAGGATGGGTTCCAAGGATGCTCTTTCATGCTCCGGCTGCAGCTATTTGCTGGTCGACATACGAAGCGTTAAAATCCTTCTTCCACGAGCTCAATGGCAACAGCAGCGACAACGAAAACGTGACCTGA | 1002 | 47.31 | MATEATEATTKFQSPDFRPVPSPPDFHPEIVVSAHDGLRFWQFMIAGSIAGSVEHMGMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKSEGPAGFYRGIGAMGLGAGPAHAVYFTVYENCKKFFSGGDPNNSLAHAASGVCATVASDAVFTPMDMVKQRLQLGNNPYKGVLDCIKRVLRDEGFKAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESVNDEQWIVHATAGAAAGASAALVTTPLDVVKTQLQCQGVCGCDRFKSGSIRDVLRTILKKDGYRGLMRGWVPRMLFHAPAAAICWSTYEALKSFFHELNGNSSDNENVT | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 18705393 | 18709193 | + | Lsi10G014600.1 | Lsi10g01460 | 673017 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01460 | 333 | Gene3D | Mitochondrial carrier domain | 168 | 332 | IPR023395 | - | |
Lsi10g01460 | 333 | PRINTS | Mitochondrial carrier protein signature | 43 | 56 | IPR002067 | GO:0055085 | |
Lsi10g01460 | 333 | PRINTS | Mitochondrial carrier protein signature | 237 | 259 | IPR002067 | GO:0055085 | |
Lsi10g01460 | 333 | PRINTS | Mitochondrial carrier protein signature | 56 | 70 | IPR002067 | GO:0055085 | |
Lsi10g01460 | 333 | PRINTS | Mitochondrial carrier protein signature | 147 | 165 | IPR002067 | GO:0055085 | |
Lsi10g01460 | 333 | PRINTS | Mitochondrial carrier protein signature | 189 | 207 | IPR002067 | GO:0055085 | |
Lsi10g01460 | 333 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 38 | 125 | IPR018108 | - | |
Lsi10g01460 | 333 | PANTHER | MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED | 5 | 326 | - | - | |
Lsi10g01460 | 333 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 132 | 216 | IPR018108 | - | |
Lsi10g01460 | 333 | SUPERFAMILY | Mitochondrial carrier | 36 | 314 | IPR023395 | - | |
Lsi10g01460 | 333 | PANTHER | MITOFERRIN-1-RELATED | 5 | 326 | - | - | |
Lsi10g01460 | 333 | Pfam | Mitochondrial carrier protein | 133 | 219 | IPR018108 | - | |
Lsi10g01460 | 333 | Pfam | Mitochondrial carrier protein | 38 | 127 | IPR018108 | - | |
Lsi10g01460 | 333 | Pfam | Mitochondrial carrier protein | 229 | 320 | IPR018108 | - | |
Lsi10g01460 | 333 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 228 | 318 | IPR018108 | - | |
Lsi10g01460 | 333 | Gene3D | Mitochondrial carrier domain | 22 | 167 | IPR023395 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01574 | Lsi-Chr1:13942708 | Lsi10g01460 | Lsi-Chr10:18705393 | 4.66E-12 | dispersed | |
Lsi04g01400 | Lsi-Chr4:21784232 | Lsi10g01460 | Lsi-Chr10:18705393 | 2.81E-22 | dispersed | |
Lsi05g01397 | Lsi-Chr5:21810658 | Lsi10g01460 | Lsi-Chr10:18705393 | 1.10E-27 | dispersed | |
Lsi08g00534 | Lsi-Chr8:13292505 | Lsi10g01460 | Lsi-Chr10:18705393 | 2.64E-09 | dispersed | |
Lsi10g00675 | Lsi-Chr10:9364119 | Lsi10g01460 | Lsi-Chr10:18705393 | 1.84E-06 | dispersed | |
Lsi10g01460 | Lsi-Chr10:18705393 | Lsi05g02083 | Lsi-Chr5:27707662 | 4.83E-30 | dispersed | |
Lsi11g01295 | Lsi-Chr11:21591833 | Lsi10g01460 | Lsi-Chr10:18705393 | 1.25E-16 | dispersed | |
Lsi10g01460 | Lsi-Chr10:18705393 | Lsi08g01194 | Lsi-Chr8:20513216 | 7.80E-31 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01460 | K15113 | - | csv:101215924 | 645.966 |