Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01469 ATGGTTATGGACTTCTTTTTTTCTAGTTTTGTAGAGGATCCTAGTGGCGGCCCCACCTTTGGCCGCCGGAGACTGCCGGAACGTGCGGCGGCTCCGCCATTGCTGCCGCCCTTGTCTCCACCTCTTTACTCTCCTTCTTCCTTCTTCACCATCCCTCCTGGTATCAGCCCCACCCAATTTCTTGACTCTCCTCTTCTCCATGTGCAAACTCGGCCATGGGGTTCTCACGCCGCCGTCAACGGCGGTTCCGAAGGCGAGCAACGGCGAGAATGGCAGTTGAGAAACAGAGGATCTGAAGACGGGTTTAATTGGAGAAAATATGGGCAAAAAGTGGTAAAAGGAAGTGAAAATCCGAGAAGCTATTACAAATGTACATACCCAAATTGCCCTGTAAGAAAGCAAGTTGAGAAATCATTGAATGGTCAAATTACAGAAATTATTTACAAAAGTAAACATAACCATCCAAAACCAGAGTTCACAAGAAGGTCATCATCGTCTTTTTCTTCAGAAGCTTTACCTGCAACTATGGCGGCAGAGCCAAATAATTCAATTGCCTCTGATTCTCTCACCACGCCGGAGAACTCTTCAATCACGATTGGGGACGATGATTCCGACGAAGCTGATGCAAAAAGATGGAAAAGTGAGAGTGAGAAGGAAATTATGTGTAGAGCAGGAGGGAAAACAGTGAGAGAACAAAGGGTTGTAGTTCAAACAATTAGCAATGTTGATAAATTAGATGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGAAATCCAAATCCAAGGAGCTATTACAAGTGCACATATGCAGGATGTGGAGTGAGAAAGCACATAGAGAGAGCCTCCCACGATTTAAGGGCAGTCATCACTACCTACGAAGGAAAGCACAACCACGAAATTCCAGCAGCCCGTGGCGGCGGCGGCAGCAACAGCAAACCAATACTTAATAATCAGGGCGGTAATAATGACGGTGCATCGAACAATGGTGGCAGCCGGCGATCGAGTTCAGAGATCTGTAGTGATAACAATGGATTGTCGGAGTTGACAAACATGTTGTGGAGGAGCAAAGAAGAGGCTGGGATAATATTGGGACCTTCGGTTCTTGGCTCCTACTCAGCATTTGCAAGCAGAGTTTTCCCATTGAGTGGAATAAATGTAGTAGAAATTTTTTCCATTTTTGGTCTCATGCTTTTTATCTTCCAAATTGGAGTGAAGATGGACCCAATGGTCATTGTGAAATTGGGTAAAAAGGCATTGGCTGTTGGAATTTTAAGCTTTGTTCTTCCTAATGCACTAGCTAGACTCACTACCTTTGCTCTCAAGCATTTTCTCTCATTGGACAAAGAGATTTCGAATGTGCTACCTCATATGGTGATGCTACTGTCCATGACTTCTTTTCCTGTGGTTGCTTGCTTTCTTGATGAGTTTGAGATTCTTAACTCAGAGATTGGTTGTCTGGCTTGTTCATCTTCTATGGTGTGTGATATATGCTATTGGTCTGTCGTGGCTTTTAACTATACCGTAACATCGCTCGAGGAAATGTCACCAGAAACTTTACTTGGTTCTTTTCTCTCAAATGGTCTTCTTCTGTCTCTTATCTTGTTTGGAATACGTCCAGGAGCTCTTTGGATTGTTCAAAATAGCCCAGAAGGCAAACCTGTGAAGGAAATTTATATATTTGCAGTTTTTGTAGCATTGCTGATTTGTGGACTCTTGGGTGAGGTTACTGGTCTTACTGCTCTTGCCACATCATTTTTCCTGGGTTTGGTCATTCCAGATGGTCCACCCTTGGGAGCTGCACTATCAGACAGGCTTGATTGCTTTGTATCAGTATTGCTCATGCCAGTATTCTTCACTGCTTGTGGATTAAGAATGAATGTTTTTTCCATACAGAAGTTGGAGAATGTGGGTGTAATTCACCTGGTTGTTTTTGTGTCACTCTTTGGAAAGGTTGTGGGGAGCATACTGCCTCCCCTTCTCTGTAGGATGCCATTTCGGGATGCACTCGCTCTTGGTCTTATTATGAACTGCAAAGGCACTATTGAACTTTTAATCTTGATCAGCTGGAAAGTACACAATGTCATGAACGATGAAAGCTTCACCATTATGATTGTCTCTTTGATCCTTGAAACAGGATTTATTTCACCTCTTGTCAAGGCCATATATAATCCTTCAAGGAGGTTCCTTGCTTACAAACGGAGGACTATCTTGCATCTTAGAAATGATGAAGAACTTAGAATACTCGCTTGCATCCATGGATTGGAGCATGCCCAGGCAATTCTGGATCTCATTTTGATGTCCAATCCGACCCATCAGAGCCCCATTAATTTGGTTGTCCTACATCTTATTAAGCTTGTAGGCCGTTCTTCTCCACTTTTAATTGCTCACCAGCCTCGTGAAAGGTTGTTTTCATACAAAACACTGTCGGAACAGATATTCAGTGCTTTTAGAAAGCTTGAAGAACATTTTGGTGACCGTATCATAATAAATTGCTACAAGGGTATTTCACCATACACGACCATGTACAATGATGTATGCTCATTAGCACTCGACAAGAGAACGATCTTTATTGTCATCCCTTTCCATAGGCAACGTACGGTTGGCGAAGGGTTAAAATCATCTCATGCTACAAGACAGTTAAACAAGAATGTACTTGACAAAGCACCTTGCACTGTTGGAGTTTTAATTGATAATGGGAAAATCAGGTCTTCCCATAATTTTTCGCGTCTGGCAATCCATCGAGTGGTAGTGCTCTTTTTTGGTGGCGCCGATGATTGA 2790 43.05 MVMDFFFSSFVEDPSGGPTFGRRRLPERAAAPPLLPPLSPPLYSPSSFFTIPPGISPTQFLDSPLLHVQTRPWGSHAAVNGGSEGEQRREWQLRNRGSEDGFNWRKYGQKVVKGSENPRSYYKCTYPNCPVRKQVEKSLNGQITEIIYKSKHNHPKPEFTRRSSSSFSSEALPATMAAEPNNSIASDSLTTPENSSITIGDDDSDEADAKRWKSESEKEIMCRAGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVKGNPNPRSYYKCTYAGCGVRKHIERASHDLRAVITTYEGKHNHEIPAARGGGGSNSKPILNNQGGNNDGASNNGGSRRSSSEICSDNNGLSELTNMLWRSKEEAGIILGPSVLGSYSAFASRVFPLSGINVVEIFSIFGLMLFIFQIGVKMDPMVIVKLGKKALAVGILSFVLPNALARLTTFALKHFLSLDKEISNVLPHMVMLLSMTSFPVVACFLDEFEILNSEIGCLACSSSMVCDICYWSVVAFNYTVTSLEEMSPETLLGSFLSNGLLLSLILFGIRPGALWIVQNSPEGKPVKEIYIFAVFVALLICGLLGEVTGLTALATSFFLGLVIPDGPPLGAALSDRLDCFVSVLLMPVFFTACGLRMNVFSIQKLENVGVIHLVVFVSLFGKVVGSILPPLLCRMPFRDALALGLIMNCKGTIELLILISWKVHNVMNDESFTIMIVSLILETGFISPLVKAIYNPSRRFLAYKRRTILHLRNDEELRILACIHGLEHAQAILDLILMSNPTHQSPINLVVLHLIKLVGRSSPLLIAHQPRERLFSYKTLSEQIFSAFRKLEEHFGDRIIINCYKGISPYTTMYNDVCSLALDKRTIFIVIPFHRQRTVGEGLKSSHATRQLNKNVLDKAPCTVGVLIDNGKIRSSHNFSRLAIHRVVVLFFGGADD 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18813088 18824599 - Lsi10G014690.1 Lsi10g01469 673026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01469 929 Pfam WRKY DNA -binding domain 246 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi10g01469 929 Pfam WRKY DNA -binding domain 99 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi10g01469 929 PANTHER CATION/H + ANTIPORTER 363 929 - -
Lsi10g01469 929 MobiDBLite consensus disorder prediction 160 198 - -
Lsi10g01469 929 PANTHER OS08G0117800 PROTEIN 363 929 - -
Lsi10g01469 929 MobiDBLite consensus disorder prediction 300 345 - -
Lsi10g01469 929 SUPERFAMILY WRKY DNA-binding domain 97 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi10g01469 929 MobiDBLite consensus disorder prediction 148 216 - -
Lsi10g01469 929 Gene3D WRKY domain 87 158 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi10g01469 929 ProSiteProfiles WRKY domain profile. 99 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi10g01469 929 SMART WRKY_cls 98 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi10g01469 929 SMART WRKY_cls 245 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi10g01469 929 MobiDBLite consensus disorder prediction 314 345 - -
Lsi10g01469 929 ProSiteProfiles WRKY domain profile. 240 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi10g01469 929 Gene3D WRKY domain 232 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi10g01469 929 SUPERFAMILY WRKY DNA-binding domain 237 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi10g01469 929 Gene3D - 362 732 IPR038770 -
Lsi10g01469 929 Pfam Sodium/hydrogen exchanger family 363 722 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02255 Lsi-Chr3:33499183 Lsi10g01469 Lsi-Chr10:18813088 5.48E-89 dispersed
Lsi10g01469 Lsi-Chr10:18813088 Lsi10g00730 Lsi-Chr10:10120813 2.55E-134 dispersed
Lsi11g01362 Lsi-Chr11:22221038 Lsi10g01469 Lsi-Chr10:18813088 2.55E-57 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26098 PF00999 Na_H_Exchanger 1.90E-33 CL0064 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01469 - - cmo:103501964 967.607