Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g01469 | ATGGTTATGGACTTCTTTTTTTCTAGTTTTGTAGAGGATCCTAGTGGCGGCCCCACCTTTGGCCGCCGGAGACTGCCGGAACGTGCGGCGGCTCCGCCATTGCTGCCGCCCTTGTCTCCACCTCTTTACTCTCCTTCTTCCTTCTTCACCATCCCTCCTGGTATCAGCCCCACCCAATTTCTTGACTCTCCTCTTCTCCATGTGCAAACTCGGCCATGGGGTTCTCACGCCGCCGTCAACGGCGGTTCCGAAGGCGAGCAACGGCGAGAATGGCAGTTGAGAAACAGAGGATCTGAAGACGGGTTTAATTGGAGAAAATATGGGCAAAAAGTGGTAAAAGGAAGTGAAAATCCGAGAAGCTATTACAAATGTACATACCCAAATTGCCCTGTAAGAAAGCAAGTTGAGAAATCATTGAATGGTCAAATTACAGAAATTATTTACAAAAGTAAACATAACCATCCAAAACCAGAGTTCACAAGAAGGTCATCATCGTCTTTTTCTTCAGAAGCTTTACCTGCAACTATGGCGGCAGAGCCAAATAATTCAATTGCCTCTGATTCTCTCACCACGCCGGAGAACTCTTCAATCACGATTGGGGACGATGATTCCGACGAAGCTGATGCAAAAAGATGGAAAAGTGAGAGTGAGAAGGAAATTATGTGTAGAGCAGGAGGGAAAACAGTGAGAGAACAAAGGGTTGTAGTTCAAACAATTAGCAATGTTGATAAATTAGATGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGAAATCCAAATCCAAGGAGCTATTACAAGTGCACATATGCAGGATGTGGAGTGAGAAAGCACATAGAGAGAGCCTCCCACGATTTAAGGGCAGTCATCACTACCTACGAAGGAAAGCACAACCACGAAATTCCAGCAGCCCGTGGCGGCGGCGGCAGCAACAGCAAACCAATACTTAATAATCAGGGCGGTAATAATGACGGTGCATCGAACAATGGTGGCAGCCGGCGATCGAGTTCAGAGATCTGTAGTGATAACAATGGATTGTCGGAGTTGACAAACATGTTGTGGAGGAGCAAAGAAGAGGCTGGGATAATATTGGGACCTTCGGTTCTTGGCTCCTACTCAGCATTTGCAAGCAGAGTTTTCCCATTGAGTGGAATAAATGTAGTAGAAATTTTTTCCATTTTTGGTCTCATGCTTTTTATCTTCCAAATTGGAGTGAAGATGGACCCAATGGTCATTGTGAAATTGGGTAAAAAGGCATTGGCTGTTGGAATTTTAAGCTTTGTTCTTCCTAATGCACTAGCTAGACTCACTACCTTTGCTCTCAAGCATTTTCTCTCATTGGACAAAGAGATTTCGAATGTGCTACCTCATATGGTGATGCTACTGTCCATGACTTCTTTTCCTGTGGTTGCTTGCTTTCTTGATGAGTTTGAGATTCTTAACTCAGAGATTGGTTGTCTGGCTTGTTCATCTTCTATGGTGTGTGATATATGCTATTGGTCTGTCGTGGCTTTTAACTATACCGTAACATCGCTCGAGGAAATGTCACCAGAAACTTTACTTGGTTCTTTTCTCTCAAATGGTCTTCTTCTGTCTCTTATCTTGTTTGGAATACGTCCAGGAGCTCTTTGGATTGTTCAAAATAGCCCAGAAGGCAAACCTGTGAAGGAAATTTATATATTTGCAGTTTTTGTAGCATTGCTGATTTGTGGACTCTTGGGTGAGGTTACTGGTCTTACTGCTCTTGCCACATCATTTTTCCTGGGTTTGGTCATTCCAGATGGTCCACCCTTGGGAGCTGCACTATCAGACAGGCTTGATTGCTTTGTATCAGTATTGCTCATGCCAGTATTCTTCACTGCTTGTGGATTAAGAATGAATGTTTTTTCCATACAGAAGTTGGAGAATGTGGGTGTAATTCACCTGGTTGTTTTTGTGTCACTCTTTGGAAAGGTTGTGGGGAGCATACTGCCTCCCCTTCTCTGTAGGATGCCATTTCGGGATGCACTCGCTCTTGGTCTTATTATGAACTGCAAAGGCACTATTGAACTTTTAATCTTGATCAGCTGGAAAGTACACAATGTCATGAACGATGAAAGCTTCACCATTATGATTGTCTCTTTGATCCTTGAAACAGGATTTATTTCACCTCTTGTCAAGGCCATATATAATCCTTCAAGGAGGTTCCTTGCTTACAAACGGAGGACTATCTTGCATCTTAGAAATGATGAAGAACTTAGAATACTCGCTTGCATCCATGGATTGGAGCATGCCCAGGCAATTCTGGATCTCATTTTGATGTCCAATCCGACCCATCAGAGCCCCATTAATTTGGTTGTCCTACATCTTATTAAGCTTGTAGGCCGTTCTTCTCCACTTTTAATTGCTCACCAGCCTCGTGAAAGGTTGTTTTCATACAAAACACTGTCGGAACAGATATTCAGTGCTTTTAGAAAGCTTGAAGAACATTTTGGTGACCGTATCATAATAAATTGCTACAAGGGTATTTCACCATACACGACCATGTACAATGATGTATGCTCATTAGCACTCGACAAGAGAACGATCTTTATTGTCATCCCTTTCCATAGGCAACGTACGGTTGGCGAAGGGTTAAAATCATCTCATGCTACAAGACAGTTAAACAAGAATGTACTTGACAAAGCACCTTGCACTGTTGGAGTTTTAATTGATAATGGGAAAATCAGGTCTTCCCATAATTTTTCGCGTCTGGCAATCCATCGAGTGGTAGTGCTCTTTTTTGGTGGCGCCGATGATTGA | 2790 | 43.05 | MVMDFFFSSFVEDPSGGPTFGRRRLPERAAAPPLLPPLSPPLYSPSSFFTIPPGISPTQFLDSPLLHVQTRPWGSHAAVNGGSEGEQRREWQLRNRGSEDGFNWRKYGQKVVKGSENPRSYYKCTYPNCPVRKQVEKSLNGQITEIIYKSKHNHPKPEFTRRSSSSFSSEALPATMAAEPNNSIASDSLTTPENSSITIGDDDSDEADAKRWKSESEKEIMCRAGGKTVREQRVVVQTISNVDKLDDGYWWRKYGQKVVKGNPNPRSYYKCTYAGCGVRKHIERASHDLRAVITTYEGKHNHEIPAARGGGGSNSKPILNNQGGNNDGASNNGGSRRSSSEICSDNNGLSELTNMLWRSKEEAGIILGPSVLGSYSAFASRVFPLSGINVVEIFSIFGLMLFIFQIGVKMDPMVIVKLGKKALAVGILSFVLPNALARLTTFALKHFLSLDKEISNVLPHMVMLLSMTSFPVVACFLDEFEILNSEIGCLACSSSMVCDICYWSVVAFNYTVTSLEEMSPETLLGSFLSNGLLLSLILFGIRPGALWIVQNSPEGKPVKEIYIFAVFVALLICGLLGEVTGLTALATSFFLGLVIPDGPPLGAALSDRLDCFVSVLLMPVFFTACGLRMNVFSIQKLENVGVIHLVVFVSLFGKVVGSILPPLLCRMPFRDALALGLIMNCKGTIELLILISWKVHNVMNDESFTIMIVSLILETGFISPLVKAIYNPSRRFLAYKRRTILHLRNDEELRILACIHGLEHAQAILDLILMSNPTHQSPINLVVLHLIKLVGRSSPLLIAHQPRERLFSYKTLSEQIFSAFRKLEEHFGDRIIINCYKGISPYTTMYNDVCSLALDKRTIFIVIPFHRQRTVGEGLKSSHATRQLNKNVLDKAPCTVGVLIDNGKIRSSHNFSRLAIHRVVVLFFGGADD | 929 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 18813088 | 18824599 | - | Lsi10G014690.1 | Lsi10g01469 | 673026 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g01469 | 929 | Pfam | WRKY DNA -binding domain | 246 | 303 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g01469 | 929 | Pfam | WRKY DNA -binding domain | 99 | 155 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g01469 | 929 | PANTHER | CATION/H + ANTIPORTER | 363 | 929 | - | - | |
Lsi10g01469 | 929 | MobiDBLite | consensus disorder prediction | 160 | 198 | - | - | |
Lsi10g01469 | 929 | PANTHER | OS08G0117800 PROTEIN | 363 | 929 | - | - | |
Lsi10g01469 | 929 | MobiDBLite | consensus disorder prediction | 300 | 345 | - | - | |
Lsi10g01469 | 929 | SUPERFAMILY | WRKY DNA-binding domain | 97 | 157 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g01469 | 929 | MobiDBLite | consensus disorder prediction | 148 | 216 | - | - | |
Lsi10g01469 | 929 | Gene3D | WRKY domain | 87 | 158 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g01469 | 929 | ProSiteProfiles | WRKY domain profile. | 99 | 157 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g01469 | 929 | SMART | WRKY_cls | 98 | 156 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g01469 | 929 | SMART | WRKY_cls | 245 | 304 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g01469 | 929 | MobiDBLite | consensus disorder prediction | 314 | 345 | - | - | |
Lsi10g01469 | 929 | ProSiteProfiles | WRKY domain profile. | 240 | 305 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g01469 | 929 | Gene3D | WRKY domain | 232 | 298 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g01469 | 929 | SUPERFAMILY | WRKY DNA-binding domain | 237 | 305 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi10g01469 | 929 | Gene3D | - | 362 | 732 | IPR038770 | - | |
Lsi10g01469 | 929 | Pfam | Sodium/hydrogen exchanger family | 363 | 722 | IPR006153 | GO:0006812|GO:0015299|GO:0016021|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g02255 | Lsi-Chr3:33499183 | Lsi10g01469 | Lsi-Chr10:18813088 | 5.48E-89 | dispersed | |
Lsi10g01469 | Lsi-Chr10:18813088 | Lsi10g00730 | Lsi-Chr10:10120813 | 2.55E-134 | dispersed | |
Lsi11g01362 | Lsi-Chr11:22221038 | Lsi10g01469 | Lsi-Chr10:18813088 | 2.55E-57 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26098 | PF00999 | Na_H_Exchanger | 1.90E-33 | CL0064 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g01469 | - | - | cmo:103501964 | 967.607 |