Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi10g01471 | ATGAATTCTTCGCCGGGGCCATCACGGCCGGACCTCCCCGTAGCGCCTAATCGCGGGAAGTTTCAATCGGAGACGGAGAGATTGAGCGCCGACGTTGGTGGATTGGAAGCTTCGTTGCTTCAGATGGTCAATGATCACCACTACGCCTCTCTCAAGCTCAGGGAAAACTCCGAGAAGGCGAAGAAAGATGCTATACAGAAGGCGGTGCGCGTTTCGGATCTTTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTCGAAATTAGGGCTTTAGCGACTACGATTGCGCGATTTACGAAGCAGACCGATCAATGGCTCGCTGCCACTCACGCTTTGAACACTGCCGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTCGATTATGACTGTATCTTTGTTGACAAACTCAGCCACTCTCATTTCCTAGCGTCTGGAGGAGTCCCGTTTTGTTATACTTCAACAGAAAAGAGGCCCAGGCTTGAGCTGAACCCGCTGACGATTCTGATGGGATTGCTTTCTACGTTAATTCTGGATTCATCTTGGCTTGGACGTCAACAGCACTCAGTTTTGGATTTGGAGAATACTCATTTTGACTTCGTGTGTGATGTTGCAAACGTTAACGATGGAATAGTTCAGAGTCTAGCTGCCCTAACCCATAGCCATGCACAGCTGATTCCAAACTATTACAACAAAGTCTGCCCTAAGGCCTTGTCCACCATCAAATCCGTTGTATGGAACGCCGTTAGACGCGAGCCTCGAATGGGAGCTTCACTCTTACGTCTCCATTTCCACGACTGCTTTGTCAACGGTTGTGATGGGTCCGTCTTGTTGGATGATACGGCTACTTTTACTGGAGAAAAGACTGCGTTTGCTAATATTAACTCGATTAGAGGATTTGAAGTCGTCGACGAGATTAAGAAACAAGTCAATAAAGCTTGCAAAGGCAATGTAGTGTCGTGTGCCGACATTTTAGCTGTTGCTGCTCGTGACTCCGTTGCAATTCTCGGAGGGCCAAACTACAAAGTACTAGTAGGAAGAAGAGACGCAAGAACAACGAGTGCAAACGATGCCAACAGAAATCTCCCTCCACCATTTTTCAGCTTCTCACAACTTCTATCCAACTTCCAATCTCATGGCCTCGACGTCAAAGACCTCGTCGTCTTATCGGCTGGCCACACTCTCGGGTACGCCCGGTGCACCACTTTCCGAACTAGGATATACAATGACACCAACATCGACCCACAATTCGCAGCAGCGTTGCAGGGAATCTGCCCACAGAGTGGCGGCGATGACAATTTGAAGGGCCTTGACAGGACTCCAAATTTATTTGACAATGCCTACTTCAAGGCTTTGTTGACAAACAAGGGTCTTTTACATTCAGATCAGGAGCTGTTCGGCGGCGGCAACAGCGACAGCGATGGTTTGGTGAAGTATTATAGTAGATATCCATATGCCTTTAGAAATGACTTTGGTTCTTCCATGATCAAAATGGGGAATATGAAGCCACTTACAGGAACTGCCCTAAGCCATAGCCATGCACAACTGACTCCAAACTTTTACAACAATGTCTGTCCCATGGCCTTGCCCACCATCAAATTCGTCGTTTGGAACGCCATCAAACGCGAGCCTCGAATGGGAGCTTCCCTCTTACGTCTCCATTTCCACGAATGTTTTGTCAACGGTTGTGACGGGTCGGTTTTGTTGGATGATACTGCTACTTTCACTGGAGAAAAAACTGCATTTCCTAATGCTAACTCGATTAGAGGATTTGAAGTTGTTGATGAGATTAAGACACAAGTGAATAAAGTTTGTAAAGGAAATGTTGTGTCTTGTGCTGACATCTTAGCCATTGTTGCTCGTGACTCCGTTGCTATTTTGACTCAATCACAAGCATTTATTTTAGCTCGGAGGGTCAAACTACAACGTACTAGTAGGAAGAAGAGACGCAAGAACAACGAGTGTGCCAACATAAATCTCCCTCCACCATTTTTCAACTTCACACAACTTCTATCCAACTTCCAATCTCCCGGTCTCAACCTCAAGGACCTTGTGGTCTTGTCGGCCGGCCACACTCTCGGGTACACTCGGTGCACTAGTTTTCAAACTAGGATATACAACAACACCAACATGAACCGAAAATTTGCAGCGATGTTGCAAGGAAACTGCCCACAGAGCGGCGGTGATGACAATCTAAAAGGCCTTGACATGACTCCAAATTTCTTTGACAATGCCTACTTCAAGGCTTTGTTGACAAACAATGGCCTTCTACATTCCGACCAGGAACTGTTCCGCGGCGGCAATGGCGATAGCGATGGTTTGGTGAAGTATTATAGTAGATATCCATTTGCCTTTAGAAATGATTTTGGTTCTTCCATGATCAAAATGGGGAATATGAAGCCACTTACAGGAAGTAATGGAGAAATCAGAGCCAATTGCAGGCTTGTCAATTGA | 2493 | 46.09 | MNSSPGPSRPDLPVAPNRGKFQSETERLSADVGGLEASLLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDYDCIFVDKLSHSHFLASGGVPFCYTSTEKRPRLELNPLTILMGLLSTLILDSSWLGRQQHSVLDLENTHFDFVCDVANVNDGIVQSLAALTHSHAQLIPNYYNKVCPKALSTIKSVVWNAVRREPRMGASLLRLHFHDCFVNGCDGSVLLDDTATFTGEKTAFANINSIRGFEVVDEIKKQVNKACKGNVVSCADILAVAARDSVAILGGPNYKVLVGRRDARTTSANDANRNLPPPFFSFSQLLSNFQSHGLDVKDLVVLSAGHTLGYARCTTFRTRIYNDTNIDPQFAAALQGICPQSGGDDNLKGLDRTPNLFDNAYFKALLTNKGLLHSDQELFGGGNSDSDGLVKYYSRYPYAFRNDFGSSMIKMGNMKPLTGTALSHSHAQLTPNFYNNVCPMALPTIKFVVWNAIKREPRMGASLLRLHFHECFVNGCDGSVLLDDTATFTGEKTAFPNANSIRGFEVVDEIKTQVNKVCKGNVVSCADILAIVARDSVAILTQSQAFILARRVKLQRTSRKKRRKNNECANINLPPPFFNFTQLLSNFQSPGLNLKDLVVLSAGHTLGYTRCTSFQTRIYNNTNMNRKFAAMLQGNCPQSGGDDNLKGLDMTPNFFDNAYFKALLTNNGLLHSDQELFRGGNGDSDGLVKYYSRYPFAFRNDFGSSMIKMGNMKPLTGSNGEIRANCRLVN | 830 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 18840896 | 18856141 | - | Lsi10G014710.1 | Lsi10g01471 | 673028 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi10g01471 | 830 | CDD | secretory_peroxidase | 237 | 521 | IPR033905 | GO:0004601|GO:0042744 | |
| Lsi10g01471 | 830 | PANTHER | PEROXIDASE 72-RELATED | 225 | 520 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PANTHER | PEROXIDASE 72-RELATED | 522 | 829 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | Pfam | Peroxidase | 255 | 494 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | Pfam | Peroxidase | 549 | 791 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | Pfam | GCN5-like protein 1 (GCN5L1) | 42 | 145 | IPR009395 | GO:0031083 | |
| Lsi10g01471 | 830 | ProSiteProfiles | Plant heme peroxidase family profile. | 237 | 535 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | Gene3D | Peroxidase, domain 2 | 376 | 511 | - | - | |
| Lsi10g01471 | 830 | Gene3D | Peroxidase, domain 2 | 674 | 809 | - | - | |
| Lsi10g01471 | 830 | SUPERFAMILY | Heme-dependent peroxidases | 528 | 830 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | CDD | secretory_peroxidase | 528 | 829 | IPR033905 | GO:0004601|GO:0042744 | |
| Lsi10g01471 | 830 | ProSitePatterns | Peroxidases active site signature. | 269 | 280 | IPR019794 | GO:0004601 | |
| Lsi10g01471 | 830 | PRINTS | Haem peroxidase superfamily signature | 398 | 413 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Haem peroxidase superfamily signature | 269 | 283 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Haem peroxidase superfamily signature | 332 | 349 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Haem peroxidase superfamily signature | 450 | 465 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Haem peroxidase superfamily signature | 350 | 362 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PANTHER | CATIONIC PEROXIDASE | 522 | 829 | - | - | |
| Lsi10g01471 | 830 | PANTHER | CATIONIC PEROXIDASE | 225 | 520 | - | - | |
| Lsi10g01471 | 830 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Lsi10g01471 | 830 | ProSitePatterns | Peroxidases active site signature. | 560 | 571 | IPR019794 | GO:0004601 | |
| Lsi10g01471 | 830 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 398 | 408 | IPR019793 | - | |
| Lsi10g01471 | 830 | Gene3D | - | 532 | 827 | - | - | |
| Lsi10g01471 | 830 | Gene3D | - | 241 | 520 | - | - | |
| Lsi10g01471 | 830 | ProSiteProfiles | Plant heme peroxidase family profile. | 528 | 830 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Plant peroxidase signature | 448 | 463 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Plant peroxidase signature | 506 | 519 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Plant peroxidase signature | 331 | 341 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Plant peroxidase signature | 397 | 409 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Plant peroxidase signature | 464 | 481 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Plant peroxidase signature | 311 | 324 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Plant peroxidase signature | 271 | 291 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Plant peroxidase signature | 350 | 365 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | PRINTS | Plant peroxidase signature | 247 | 266 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
| Lsi10g01471 | 830 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 696 | 706 | IPR019793 | - | |
| Lsi10g01471 | 830 | SUPERFAMILY | Heme-dependent peroxidases | 237 | 520 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi10g01471 | Lsi-Chr10:18840896 | Lsi11g01574 | Lsi-Chr11:24075599 | 4.29E-91 | dispersed | |
| Lsi10g01471 | Lsi-Chr10:18840896 | Lsi10g01472 | Lsi-Chr10:18858744 | 6.06E-92 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi10g01471 | K00430 | - | csv:101204979 | 504.212 |