Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01472 ATGGTGATTATCATTTTTTCTTCTCGTAACAATATGGTTGTAGCTTTAGCGATAACTTTATTAGCAGTGTTCACAGGGAGCTCTTCAGCTCAACTCTCTTCCAATTTCTACTATGATAGTTGCCCTAAGCTTCTCAGTACCGTTAGAGTCGGTATTCAATCCGTTGTCGCTCAAGAAGCTCGCATGGGCGCTTCCCTTCTTCGCCTTCACTTTCACGATTGTTTCGTTAACGGTTGTGATGGATCGATTCTTCTAGAAGACACTCCTACGTTTATAGGAGAGCAAACTGCAGCTCCCAACAACAGATCTGTTAGAGGGTTCAACGTGATTGAGAGCATAAAGAAAAATGTTGAGAAAGTTTGCCCTGGTGTCGTCTCTTGTGCTGATATTTTGACTCTTTCAGCTCGTGACTCAGTTGTAGTGCTTGGAGGGCCAAGTTGGGAGGTGAAATTGGGAAGAAGAGATTCTAAATCAGCTAGCTTCTCCGATGTCACTGGTGCTATTCCTCCACCAACTTCCACCCTCGACACCCTCATTAATCGATTCAACTCCAAAGGCCTCTCCCCTCGAGACTTGGTTGCCTTATCTGGGGCACACACAATCGGGCAAGCAAAATGTTTGTTTTTCAAGAATCGTATATATAACGAGAGCAACATCGATGAATCGTTCGCTGAGGAGAGACAAAGGAATTGCCCAACAAATGGAGGAGACGACAATCGTGCTCCTTTGGACTACAGAACCCCAAAGCTATTCGACAACTACTACTACAAGAACCTCTTGGAGAAGAAGGGTTTGCTCCGCTCCGATCAGGTGCTCCACGACGGCGGATCCACCGATTCCTTGGTTGAACTCTACGGCGATGACAGTGATGCCTTTGAGTCTGACTTCGTGGCAGCTATGATCAAGATGGGCGACATTGAACCGCTCACTGGATCACAGGGTGAAATTCGTAAGATTTGTAGCCGACCCAACTGA 975 46.26 MVIIIFSSRNNMVVALAITLLAVFTGSSSAQLSSNFYYDSCPKLLSTVRVGIQSVVAQEARMGASLLRLHFHDCFVNGCDGSILLEDTPTFIGEQTAAPNNRSVRGFNVIESIKKNVEKVCPGVVSCADILTLSARDSVVVLGGPSWEVKLGRRDSKSASFSDVTGAIPPPTSTLDTLINRFNSKGLSPRDLVALSGAHTIGQAKCLFFKNRIYNESNIDESFAEERQRNCPTNGGDDNRAPLDYRTPKLFDNYYYKNLLEKKGLLRSDQVLHDGGSTDSLVELYGDDSDAFESDFVAAMIKMGDIEPLTGSQGEIRKICSRPN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18858744 18860306 + Lsi10G014720.1 Lsi10g01472 673029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01472 324 CDD secretory_peroxidase 31 322 IPR033905 GO:0004601|GO:0042744
Lsi10g01472 324 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Lsi10g01472 324 Gene3D - 35 321 - -
Lsi10g01472 324 Pfam Peroxidase 52 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 ProSiteProfiles Plant heme peroxidase family profile. 31 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PANTHER PEROXIDASE 10 321 - -
Lsi10g01472 324 PANTHER PEROXIDASE 72-RELATED 10 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 SUPERFAMILY Heme-dependent peroxidases 31 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi10g01472 324 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Lsi10g01472 324 Gene3D Peroxidase, domain 2 169 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00276 Lsi-Chr3:3387980 Lsi10g01472 Lsi-Chr10:18858744 4.20E-106 dispersed
Lsi10g01472 Lsi-Chr10:18858744 Lsi10g01474 Lsi-Chr10:18870058 0 dispersed
Lsi10g01471 Lsi-Chr10:18840896 Lsi10g01472 Lsi-Chr10:18858744 6.06E-92 tandem
Lsi10g01472 Lsi-Chr10:18858744 Lsi10g01473 Lsi-Chr10:18863469 8.50E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01472 K00430 - csv:101204245 578.17