Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01473 ATGGGCGCTTCCCTTCTCCACCTCCACTTTCATGATTGCTTCGTCAACGGTTGCGATGGATCGATCCTTGTAGATGATACTCCTACGTTTATAGGAGAGCAAACAGCAGCTCCTAATAATAGATCTGTGAGAGGGTTCAACGTGATTGAGAGTATAAAGAAAAACATTGAAAAAATTTGTCCTGGCGTTGTCTCTTGTGCTGATATTTTGACTCTTTCTGCTTGCGACTCTGTTGTAGCATTGGGAAGGCCAAGTTGGAAAGTGAAATTGGGAAGAAGAGATTCTAAAACAGCCAGCTTCTCTGATGTCACTGGTGCTATTCCTCCGCCAACCTCCACCCTTGCCACCCTCATCAATCGGTTCAATACCAAAGGCCTTTCTCCAAAGGATTTGGTTGCTTTATCTGGTAGTACCATAAATTCCTATGGACACACACAATTGGGAAAGCAAGGTGTTTGTTTTTCAAGAACCGCATTTACAACGAAACCAACATCGATAAGTCTTTCGCTAAAGAGAGACAAAGGAATTGCCCAAGAAATGGAGGAGACTGACAATCGTGCGCCTTTTGACTTTAGAACCCCAAAGGTTTTTGACAACTATTACTACAAGAACCTTTTAGAGAAAAAAGCTTTGCTCCCCTCGGATCAGGTGCTACATGACGGCGGATCCACCGATTCCTTAGTTGAACTCTACAGCCACGACATTGCCGCCTTTGAATCTGACTTTGTAGCGGCCATGATCAAGATGGGTGACATTCAGCCGCTCACTGGATTGCAAGGCGAGATCCGAAAAGTCTGTAGTCGACCCAACTAA 813 44.65 MGASLLHLHFHDCFVNGCDGSILVDDTPTFIGEQTAAPNNRSVRGFNVIESIKKNIEKICPGVVSCADILTLSACDSVVALGRPSWKVKLGRRDSKTASFSDVTGAIPPPTSTLATLINRFNTKGLSPKDLVALSGSTINSYGHTQLGKQGVCFSRTAFTTKPTSISLSLKRDKGIAQEMEETDNRAPFDFRTPKVFDNYYYKNLLEKKALLPSDQVLHDGGSTDSLVELYSHDIAAFESDFVAAMIKMGDIQPLTGLQGEIRKVCSRPN 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18863469 18865192 + Lsi10G014730.1 Lsi10g01473 673030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01473 270 SUPERFAMILY Heme-dependent peroxidases 1 270 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 ProSiteProfiles Plant heme peroxidase family profile. 1 270 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 PANTHER PEROXIDASE 72-RELATED 1 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 Pfam Peroxidase 1 233 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 Gene3D - 1 270 - -
Lsi10g01473 270 PRINTS Plant peroxidase signature 63 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 PRINTS Plant peroxidase signature 82 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 PRINTS Plant peroxidase signature 204 221 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 PRINTS Plant peroxidase signature 4 24 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 PRINTS Plant peroxidase signature 244 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 PRINTS Plant peroxidase signature 44 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 PRINTS Plant peroxidase signature 188 203 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 PRINTS Plant peroxidase signature 129 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 CDD secretory_peroxidase 1 268 IPR033905 GO:0004601|GO:0042744
Lsi10g01473 270 PRINTS Haem peroxidase superfamily signature 64 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 PRINTS Haem peroxidase superfamily signature 2 16 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 PRINTS Haem peroxidase superfamily signature 130 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 PRINTS Haem peroxidase superfamily signature 82 94 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01473 270 Gene3D Peroxidase, domain 2 108 249 - -
Lsi10g01473 270 PANTHER PEROXIDASE 1 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01473 Lsi-Chr10:18863469 Lsi10g01475 Lsi-Chr10:18880440 4.08E-120 dispersed
Lsi10g01472 Lsi-Chr10:18858744 Lsi10g01473 Lsi-Chr10:18863469 8.50E-145 tandem
Lsi10g01473 Lsi-Chr10:18863469 Lsi10g01474 Lsi-Chr10:18870058 1.77E-139 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01473 K00430 - csv:101208108 410.223