Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01474 ATGGCGATTATTACAACTTATTCTCGTAACAAAATAGTTGTGGCTTTAGCATTAGCCTTCTTGACAGTGTTCGTAGGGAGCTCTTCAGCTCAGCTCTCTCACAACTTCTACTATAAGAGTTGCCCTAAGCTTCTTAGCACTGTCAGAGCTGGTATTCACTCTGTCGTGGCTAAAGAAGCTCGCATGGGTGCTTCCCTTCTCCGCCTTCACTTTCATGACTGTTTTGTTAATGGTTGTGATGGATCGATTCTTCTGGAAGATACTCCTACGTTTACAGGAGAGCAAACAGCAGCTCCCAACAATAGATCTGTTAGAGGATTCGATGTGATTGAGAATATAAAGAAAAATGTCGAAAAAGTTTGCCCTGGTGTTGTCTCTTGTGCTGATATTTTGACTCTTTCTGCTCGGGACTCTGTCGTAGCTCTTGGAGGGCCAAGTTGGAAGGTAAAATTAGGAAGAAGAGATTCGAAAACAGCCAGCTTCTCTGACGTCACTGGTGCCATTCCTCCACCAACCTCAACCCTCGACACCCTCATCAATAGATTCAACACCAAAGGCCTTTCCCCTCGGGACTTGAATCGTATATACAATGAGAGCAACATCGACGAATCATTCGCTGAGGATAGACAAAGGAATTGCCCAACAAATGGAGGAGATGACAATCGTGCCCCTTTGGACTTTAGAACCCCGAAACTTTTTGACAACTACTACTATAAGAACCTTTTGGAGAAGAAGGCTTTGCTCCGCTCCGATCAGGTGCTCCACGACGGTGGATCCACCGATTCCTTGGTTGAACTTTATAGCGACGACAGTGATGCCTTTGAGTCTGACTTTGTGGCGGCTATGATTAAGATGGGCGATATTGAACCACTCACTGGATCACAGGGTGAGATTCGTAAGATTTGCAACCGACCAAACTAG 921 45.28 MAIITTYSRNKIVVALALAFLTVFVGSSSAQLSHNFYYKSCPKLLSTVRAGIHSVVAKEARMGASLLRLHFHDCFVNGCDGSILLEDTPTFTGEQTAAPNNRSVRGFDVIENIKKNVEKVCPGVVSCADILTLSARDSVVALGGPSWKVKLGRRDSKTASFSDVTGAIPPPTSTLDTLINRFNTKGLSPRDLNRIYNESNIDESFAEDRQRNCPTNGGDDNRAPLDFRTPKLFDNYYYKNLLEKKALLRSDQVLHDGGSTDSLVELYSDDSDAFESDFVAAMIKMGDIEPLTGSQGEIRKICNRPN 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18870058 18871650 + Lsi10G014740.1 Lsi10g01474 673031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01474 306 PANTHER PEROXIDASE 72-RELATED 193 303 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PANTHER PEROXIDASE 72-RELATED 10 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PRINTS Haem peroxidase superfamily signature 226 241 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 ProSiteProfiles Plant heme peroxidase family profile. 31 306 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PANTHER PEROXIDASE 193 303 - -
Lsi10g01474 306 PANTHER PEROXIDASE 10 192 - -
Lsi10g01474 306 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PRINTS Plant peroxidase signature 224 239 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PRINTS Plant peroxidase signature 240 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 PRINTS Plant peroxidase signature 280 293 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 SUPERFAMILY Heme-dependent peroxidases 31 306 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 Pfam Peroxidase 49 270 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01474 306 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Lsi10g01474 306 CDD secretory_peroxidase 31 304 IPR033905 GO:0004601|GO:0042744
Lsi10g01474 306 Gene3D Peroxidase, domain 2 169 192 - -
Lsi10g01474 306 Gene3D Peroxidase, domain 2 195 285 - -
Lsi10g01474 306 Gene3D - 286 306 - -
Lsi10g01474 306 Gene3D - 35 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01472 Lsi-Chr10:18858744 Lsi10g01474 Lsi-Chr10:18870058 0 dispersed
Lsi10g01474 Lsi-Chr10:18870058 Lsi11g00022 Lsi-Chr11:240308 1.20E-116 dispersed
Lsi10g01473 Lsi-Chr10:18863469 Lsi10g01474 Lsi-Chr10:18870058 1.77E-139 tandem
Lsi10g01474 Lsi-Chr10:18870058 Lsi10g01475 Lsi-Chr10:18880440 7.26E-163 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01474 K00430 - csv:101204245 545.043